RchiOBHm_Chr2g0111461

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000917
Physical Location & Seq
Forward (+)
23104846 .. 23106273
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48505

Sequence Viewer

Length: 1428 bp
ATGGGCAAGGAAAAAGAATCTGATGTCATTGCCAACATCAGGAGGAGTTATGAAGACCTTGACGGCACGGAATTGAAGGTCTGCTTGCTTTCTTTGTCGATCTTCCCCGAAAATAATGCCATAAAGAAGAGGCCTCTAATCTACTGGTGGATAGGCGAGGGCTTCATTACATCTACCAAAGAGAAGAGAGCAGAAGAGATCGGAGAAGAAATCTTCGAAAAGCTCATGAGGAAGGACTTGATTCAACCAGGTGAAGGTGAGCCCAACTGTGAATTACTTGTCAAAAGTTGTACTATGCACCCTTGGATTCGTCGCATGTTGATATCCTTGGCCAGTGAGGCTAGGCTATTCCACTTTGATTCAATATGGCCAATGATGCCATCTTATTCCATTCCAACTTGGAGGCGCGCATGTTTAGTTTCTAAGGATCCAGTAAAAGTTGAACCAATTCCCGAGGGTGCTGAGTTGAATACTCTATTGACATTATTCAATGTAAATGTTCAATATCTTGATTTGGAACAAAAACGACTAGAGGAGTTGAAGAAGGTTGAGGTTCTTCAGCTTGGACGGTGGCAGAACTCGCCTACACATCACATTGAATTGGAACATCGAAGATCTGTTGGTGCCTCATCAGCTGAGGGAATTCTAAATGGATTGGGGGCTCAGAAGTACTTGAAGTATTTAAGCCTCCGAGGAATATCGAGAATTACCCAACTCCCTGATTCCATCTTGAGTCTTATCAGCCTCGAAATTCTCGATCTGAGAGCATGTCACGACTTAGAGAGGTTACCTTCGGATATCTCTTCACTGAAGAAGCTCACACATTTGGATGTATCGGAGTGTTTCTTACTGGAAGGCATGCCGAAAGGGCTTCAAAAACTTGCTTCCCTTCAAGTACTAAAAGGTTTTCTGATAGGAACACTGAAGAAAACTCCCTGCCGGCTTGGTGAGCTTGCCAAGTTGAAGAATCTAAGGCGGCTCAGCATACACTTGGGAAATGAGGCTTCCGTTCAACAAGGAGAATTCACAAAGCTAGAGGGTGTATCTTCTCTTCGCCACCTGAAAATATCATGGGGAGTGCTTTCTTCAAATTTCAAAAAAGATATCGACAAGGAGTCCGGGAAATTATCGTTTCCATCCAACTTAGAAAAACTTGATCTTCAAGGCCTTCCAATATCGAATTTACCAGAAGGGTTGAAGCCTAGCAAACTGAAGAAGTTAAAGAAGCTCTATATAATGGGTGGGGAACTTAATAGCTTGTCTCATGGGGAAACTAATGAGCACTGGAAAGTGGAAATCTTGCGTCTCCATTTCCTCAAAAAACTGAAATCGCCAGGCTTGGAGAGACTCAAGAGAGAGTTTCCTTGTATGCAGTACTGCGCAGTTTCAAAATTGTTGGTAGATGAGCAAAATAATGCTCCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

475

Amino Acids

54.01

Weight (kDa)

8.98

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 34 - 104 1.3e-15 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 170 - 281 1.7e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 215 - 462 1e-25 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1381
AccB1I GGYRCC 1 cut(s) 623
AccII CGCG 1 cut(s) 408
AciI CCGC 1 cut(s) 976
AclWI GGATC 2 cut(s) 422, 435
AcoI YGGCCR 2 cut(s) 330, 368
AcsI RAATTY 5 cut(s) 642, 750, 1022, 1090, 1180
AcuI CTGAAG 4 cut(s) 542, 830, 944, 1232
AfaI GTAC 4 cut(s) 292, 671, 897, 1376
AfiI CCNNNNNNNGG 2 cut(s) 39, 254
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 2 cut(s) 247, 1333
AluBI AGCT 8 cut(s) 223, 562, 635, 817, 952, 1033, 1228, 1257
AluI AGCT 8 cut(s) 223, 562, 635, 817, 952, 1033, 1228, 1257
Alw21I GWGCWC 1 cut(s) 1284
Alw26I GTCTC 3 cut(s) 1266, 1310, 1339
AlwI GGATC 2 cut(s) 422, 435
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 4 cut(s) 131, 330, 368, 1165
ApoI RAATTY 5 cut(s) 642, 750, 1022, 1090, 1180
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 3 cut(s) 408, 410, 1382
AsuC2I CCSGG 1 cut(s) 1120
AsuHPI GGTGA 3 cut(s) 263, 269, 959
AsuII TTCGAA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 452
BalI TGGCCA 2 cut(s) 332, 370
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 2 cut(s) 264, 664
BarI GAAGNNNNNNTAC 2 cut(s) 1035, 1067
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 1284
BbvCI CCTCAGC 1 cut(s) 636
BccI CCATC 3 cut(s) 388, 734, 1144
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 249, 1335
BcnI CCSGG 1 cut(s) 1120
BcoDI GTCTC 3 cut(s) 1266, 1310, 1339
BfaI CTAG 5 cut(s) 342, 530, 1034, 1203, 1426
BglI GCCNNNNNGGC 2 cut(s) 338, 868
BglII AGATCT 1 cut(s) 614
BisI GCNGC 1 cut(s) 977
BlpI GCTNAGC 1 cut(s) 980
BlsI GCNGC 1 cut(s) 978
BmcAI AGTACT 3 cut(s) 671, 897, 1376
Bme1390I CCNGG 3 cut(s) 249, 1120, 1335
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmeT110I CYCGRG 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 429, 625
BmrFI CCNGG 3 cut(s) 249, 1120, 1335
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 636
Bpu1102I GCTNAGC 1 cut(s) 980
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 751, 1334
BpuMI CCSGG 1 cut(s) 1120
BsaJI CCNNGG 4 cut(s) 302, 327, 453, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 254
Bse118I RCCGGY 1 cut(s) 939
Bse1I ACTGG 5 cut(s) 149, 333, 431, 855, 1289
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 249, 1335
BseDI CCNNGG 4 cut(s) 302, 327, 453, 691
BseGI GGATG 2 cut(s) 835, 1136
BseLI CCNNNNNNNGG 2 cut(s) 39, 254
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 5 cut(s) 453, 627, 677, 752, 994
BseNI ACTGG 5 cut(s) 149, 333, 431, 855, 1289
BsePI GCGCGC 1 cut(s) 406
BseRI GAGGAG 2 cut(s) 58, 548
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 133, 332, 370, 1167
BshNI GGYRCC 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 1284
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 940, 1119
BslI CCNNNNNNNGG 2 cut(s) 39, 254
BsmAI GTCTC 3 cut(s) 1266, 1310, 1339
BsmBI CGTCTC 1 cut(s) 1310
BsnI GGCC 4 cut(s) 133, 332, 370, 1167
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 264, 664, 1284
Bsp143I GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
Bsp1720I GCTNAGC 1 cut(s) 980
BspACI CCGC 1 cut(s) 976
BspANI GGCC 4 cut(s) 133, 332, 370, 1167
BspCNI CTCAG 5 cut(s) 454, 628, 676, 753, 993
BspFNI CGCG 1 cut(s) 408
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 429, 625
BspPI GGATC 2 cut(s) 422, 435
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 939
BsrI ACTGG 5 cut(s) 149, 333, 431, 855, 1289
BssAI RCCGGY 1 cut(s) 939
BssECI CCNNGG 4 cut(s) 302, 327, 453, 691
BssHII GCGCGC 1 cut(s) 406
BssMI GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
BssT1I CCWWGG 2 cut(s) 302, 327
Bst2UI CCWGG 2 cut(s) 249, 1335
Bst4CI ACNGT 2 cut(s) 269, 570
Bst6I CTCTTC 5 cut(s) 122, 179, 189, 808, 1056
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 5 cut(s) 86, 408, 860, 941, 954
BstDEI CTNAG 9 cut(s) 423, 462, 636, 663, 761, 778, 971, 980, 1144
BstEII GGTNACC 1 cut(s) 786
BstF5I GGATG 2 cut(s) 835, 1136
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 3 cut(s) 408, 410, 1382
BstKTI GATC 7 cut(s) 102, 201, 430, 617, 760, 1159, 1425
BstMAI GTCTC 3 cut(s) 1266, 1310, 1339
BstMBI GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
BstMWI GCNNNNNNNGC 6 cut(s) 338, 376, 580, 632, 868, 949
BstNI CCWGG 2 cut(s) 249, 1335
BstNSI RCATGY 4 cut(s) 319, 414, 771, 862
BstPI GGTNACC 1 cut(s) 786
BstSCI CCNGG 3 cut(s) 247, 1118, 1333
BstUI CGCG 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 427, 614
BstYI RGATCY 2 cut(s) 427, 614
BsuRI GGCC 4 cut(s) 133, 332, 370, 1167
BtsCI GGATG 2 cut(s) 835, 1136
BtsIMutI CAGTG 4 cut(s) 340, 806, 920, 1282
Cac8I GCNNGC 5 cut(s) 86, 408, 860, 941, 954
CciI TCATGA 1 cut(s) 225
CfoI GCGC 3 cut(s) 408, 410, 1382
Cfr10I RCCGGY 1 cut(s) 939
CseI GACGC 1 cut(s) 1292
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 4 cut(s) 291, 670, 896, 1375
CviAII CATG 7 cut(s) 226, 316, 411, 768, 859, 1071, 1265
CviQI GTAC 4 cut(s) 291, 670, 896, 1375
DdeI CTNAG 9 cut(s) 423, 462, 636, 663, 761, 778, 971, 980, 1144
DpnI GATC 7 cut(s) 101, 200, 429, 616, 759, 1158, 1424
DpnII GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
DriI GACNNNNNGTC 1 cut(s) 1114
EaeI YGGCCR 2 cut(s) 330, 368
Eam1104I CTCTTC 5 cut(s) 122, 179, 189, 808, 1056
Eam1105I GACNNNNNGTC 1 cut(s) 1114
EarI CTCTTC 5 cut(s) 122, 179, 189, 808, 1056
Eco130I CCWWGG 2 cut(s) 302, 327
Eco147I AGGCCT 2 cut(s) 133, 1167
Eco24I GRGCYC 2 cut(s) 264, 664
Eco32I GATATC 3 cut(s) 324, 799, 1105
Eco57I CTGAAG 4 cut(s) 542, 830, 944, 1232
Eco88I CYCGRG 1 cut(s) 452
Eco91I GGTNACC 1 cut(s) 786
EcoO65I GGTNACC 1 cut(s) 786
EcoRI GAATTC 2 cut(s) 642, 1022
EcoRII CCWGG 2 cut(s) 247, 1333
EcoRV GATATC 3 cut(s) 324, 799, 1105
EcoT14I CCWWGG 2 cut(s) 302, 327
EcoT38I GRGCYC 2 cut(s) 264, 664
ErhI CCWWGG 2 cut(s) 302, 327
Esp3I CGTCTC 1 cut(s) 1310
FaeI CATG 7 cut(s) 229, 319, 414, 771, 862, 1074, 1268
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 7 cut(s) 225, 315, 410, 767, 858, 1070, 1264
Fnu4HI GCNGC 1 cut(s) 977
FokI GGATG 2 cut(s) 842, 1123
FriOI GRGCYC 2 cut(s) 264, 664
Fsp4HI GCNGC 1 cut(s) 977
FspBI CTAG 5 cut(s) 342, 530, 1034, 1203, 1426
FspI TGCGCA 1 cut(s) 1381
GlaI GCGC 3 cut(s) 407, 409, 1381
GluI GCNGC 1 cut(s) 977
HaeIII GGCC 4 cut(s) 133, 332, 370, 1167
HapII CCGG 2 cut(s) 940, 1119
HgaI GACGC 1 cut(s) 1292
HhaI GCGC 3 cut(s) 408, 410, 1382
Hin1II CATG 7 cut(s) 229, 319, 414, 771, 862, 1074, 1268
Hin6I GCGC 3 cut(s) 406, 408, 1380
HinP1I GCGC 3 cut(s) 406, 408, 1380
HinfI GANTC 9 cut(s) 17, 241, 307, 359, 722, 733, 967, 1115, 1347
HpaII CCGG 2 cut(s) 940, 1119
HphI GGTGA 3 cut(s) 263, 269, 959
Hpy188I TCNGA 9 cut(s) 22, 203, 666, 692, 762, 796, 838, 912, 1422
Hpy188III TCNNGA 9 cut(s) 40, 226, 452, 509, 702, 730, 755, 773, 1351
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 9 cut(s) 70, 226, 248, 538, 801, 848, 899, 1178, 1184
HpyCH4III ACNGT 2 cut(s) 269, 570
HpyCH4V TGCA 2 cut(s) 298, 1372
HpyF10VI GCNNNNNNNGC 6 cut(s) 338, 376, 580, 632, 868, 949
HpyF3I CTNAG 9 cut(s) 423, 462, 636, 663, 761, 778, 971, 980, 1144
Hsp92II CATG 7 cut(s) 229, 319, 414, 771, 862, 1074, 1268
HspAI GCGC 3 cut(s) 406, 408, 1380
KroI GCCGGC 1 cut(s) 939
KroNI GCCGGC 1 cut(s) 941
Kzo9I GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
LmnI GCTCC 1 cut(s) 1423
LweI GCATC 1 cut(s) 366
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 5 cut(s) 342, 530, 1034, 1203, 1426
MaeIII GTNAC 2 cut(s) 770, 786
MalI GATC 7 cut(s) 101, 200, 429, 616, 759, 1158, 1424
MboI GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
MflI RGATCY 2 cut(s) 427, 614
MhlI GDGCHC 3 cut(s) 264, 664, 1284
MlsI TGGCCA 2 cut(s) 332, 370
MluNI TGGCCA 2 cut(s) 332, 370
MlyI GAGTC 3 cut(s) 742, 1124, 1341
MmeI TCCRAC 2 cut(s) 419, 1164
Mox20I TGGCCA 2 cut(s) 332, 370
MroNI GCCGGC 1 cut(s) 939
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 2 cut(s) 332, 370
MseI TTAA 3 cut(s) 683, 1220, 1251
MslI CAYNNNNRTG 1 cut(s) 828
Msp20I TGGCCA 2 cut(s) 332, 370
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 940, 1119
MspR9I CCNGG 3 cut(s) 249, 1120, 1335
MvaI CCWGG 2 cut(s) 249, 1335
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 6 cut(s) 338, 376, 580, 632, 868, 949
NaeI GCCGGC 1 cut(s) 941
NciI CCSGG 1 cut(s) 1120
NdeII GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
NgoMIV GCCGGC 1 cut(s) 939
NlaIII CATG 7 cut(s) 229, 319, 414, 771, 862, 1074, 1268
NlaIV GGNNCC 2 cut(s) 429, 625
NmuCI GTSAC 1 cut(s) 770
NsbI TGCGCA 1 cut(s) 1381
NspI RCATGY 4 cut(s) 319, 414, 771, 862
NspV TTCGAA 1 cut(s) 216
PaeI GCATGC 1 cut(s) 862
PagI TCATGA 1 cut(s) 225
PauI GCGCGC 1 cut(s) 406
PceI AGGCCT 2 cut(s) 133, 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PdiI GCCGGC 1 cut(s) 941
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 6 cut(s) 17, 241, 307, 359, 722, 967
PfoI TCCNGGA 1 cut(s) 1118
PkrI GCNGC 1 cut(s) 978
PleI GAGTC 3 cut(s) 741, 1123, 1341
PpsI GAGTC 3 cut(s) 741, 1123, 1341
Psp6I CCWGG 2 cut(s) 247, 1333
PspEI GGTNACC 1 cut(s) 786
PspGI CCWGG 2 cut(s) 247, 1333
PspN4I GGNNCC 2 cut(s) 429, 625
PsuI RGATCY 2 cut(s) 427, 614
PteI GCGCGC 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 4 cut(s) 292, 671, 897, 1376
RsaNI GTAC 4 cut(s) 291, 670, 896, 1375
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 3 cut(s) 683, 1220, 1251
SatI GCNGC 1 cut(s) 977
Sau3AI GATC 7 cut(s) 99, 198, 427, 614, 757, 1156, 1422
ScaI AGTACT 3 cut(s) 671, 897, 1376
SchI GAGTC 3 cut(s) 742, 1124, 1341
ScrFI CCNGG 3 cut(s) 249, 1120, 1335
SduI GDGCHC 3 cut(s) 264, 664, 1284
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 2 cut(s) 730, 1349
SmoI CTYRAG 2 cut(s) 730, 1349
SphI GCATGC 1 cut(s) 862
SseBI AGGCCT 2 cut(s) 133, 1167
SsiI CCGC 1 cut(s) 976
SspMI CTAG 5 cut(s) 342, 530, 1034, 1203, 1426
StuI AGGCCT 2 cut(s) 133, 1167
StyD4I CCNGG 3 cut(s) 247, 1118, 1333
StyI CCWWGG 2 cut(s) 302, 327
TaaI ACNGT 2 cut(s) 269, 570
TaqI TCGA 8 cut(s) 98, 216, 610, 701, 747, 756, 1107, 1178
TatI WGTACW 4 cut(s) 290, 669, 895, 1374
TauI GCSGC 1 cut(s) 979
TfiI GAWTC 6 cut(s) 17, 241, 307, 359, 722, 967
Tru1I TTAA 3 cut(s) 683, 1220, 1251
Tru9I TTAA 3 cut(s) 683, 1220, 1251
TscAI CASTG 4 cut(s) 340, 813, 927, 1289
TseFI GTSAC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 2 cut(s) 66, 154
TspGWI ACGGA 2 cut(s) 83, 997
TspRI CASTG 4 cut(s) 340, 813, 927, 1289
XapI RAATTY 5 cut(s) 642, 750, 1022, 1090, 1180
XceI RCATGY 4 cut(s) 319, 414, 771, 862
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 5 cut(s) 342, 530, 1034, 1203, 1426
ZrmI AGTACT 3 cut(s) 671, 897, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.