Rroxscaffold_4G00302580

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000917
Physical Location & Seq
Forward (+)
22934599 .. 22935631
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302580.1

Sequence Viewer

Length: 819 bp
ATGGCCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAATTGAAGGTCTGTCTTCTTTCTTTGTCAATCTTCCACGAAGGTTCTGTGATAAGAAAGAGGCCTCTATTTCTTGGTGGATCGGTGAGGGCTTCATCACGGCTACCAAAGAGAAGACAACGAGAGGAGATAGGAGAAGACATCTTTGCAAAACTCTTGAGAAAGGACTTGATTCAACCGGCTTCGGTGAGTCCAACGCGTTCATGTTTAGTTTCTAAGGAGGATAAGTCAATAACTCCTCGGGGTGATGATCAATGGAAACAAAATCTATTGACGGTATTCAATGTAAACGTTCAACATCTTGATTTGAAACAAGAATGGCTCGACAAGTTGAAGAGGGTTGAAGTTCTTCACTTTGGCCGGTGGCGAGCTTCCCTAAATATCACATTGAAGTGGATCGAGAAAACATTTGATGGTTCACAAGCCCGAACTCCCGCTTCTATTCGCGGTCTTATCGACCTTGAAATTCTCGATCCGAGAGCATGTCATGACTTGGAGAGGTTGCCTTCGGACATCTCAACATTGAAGAAGCTAAGGAGGCTCGGCATACACTTTGGGAATGGGGCTGCAATTCAAGCGAGTGGAGTTCAAAAAGTTGAAAGATATGTCATCTCTTCGCTTCCGAAGGTATCATGGGGAGTGGTTTCTAAAAATTTGACCAAGGAGATTGATGATGAGTCCTCGAAACTCTTGTTTCCGAGAGAATTTAGAAAAATTGGATCTTCAAGGCTTTCCCCTAGCACATGCACCGAAGGGTTGAAGCCTAGCAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

272

Amino Acids

30.83

Weight (kDa)

10.04

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 241, 489
AciI CCGC 2 cut(s) 477, 489
AclI AACGTT 1 cut(s) 333
AclWI GGATC 4 cut(s) 130, 446, 509, 769
AcoI YGGCCR 2 cut(s) 3, 400
AcsI RAATTY 3 cut(s) 507, 694, 746
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 239
AluBI AGCT 2 cut(s) 413, 574
AluI AGCT 2 cut(s) 413, 574
AlwI GGATC 4 cut(s) 130, 446, 509, 769
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 3 cut(s) 3, 104, 400
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 3 cut(s) 507, 694, 746
Asp700I GAANNNNTTC 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 139, 241, 299
AvaI CYCGRG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 3 cut(s) 50, 163, 186
BbvI GCAGC 1 cut(s) 595
BccI CCATC 1 cut(s) 449
BceAI ACGGC 1 cut(s) 158
BclI TGATCA 1 cut(s) 292
BfaI CTAG 3 cut(s) 780, 807, 817
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
BmeT110I CYCGRG 1 cut(s) 282
BpiI GAAGAC 3 cut(s) 50, 163, 186
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 281, 702
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 2 cut(s) 220, 402
BseDI CCNNGG 2 cut(s) 281, 702
BseLI CCNNNNNNNGG 1 cut(s) 12
BseRI GAGGAG 3 cut(s) 31, 182, 270
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 595
Bsh1236I CGCG 2 cut(s) 241, 489
BshFI GGCC 3 cut(s) 5, 106, 402
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 2 cut(s) 221, 403
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 3 cut(s) 5, 106, 402
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 6 cut(s) 28, 122, 292, 438, 514, 761
BspACI CCGC 2 cut(s) 477, 489
BspANI GGCC 3 cut(s) 5, 106, 402
BspFNI CGCG 2 cut(s) 241, 489
BspHI TCATGA 1 cut(s) 529
BspPI GGATC 4 cut(s) 130, 446, 509, 769
BsrFI RCCGGY 2 cut(s) 220, 402
BssAI RCCGGY 2 cut(s) 220, 402
BssECI CCNNGG 2 cut(s) 281, 702
BssMI GATC 6 cut(s) 28, 122, 292, 438, 514, 761
BssT1I CCWWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 371, 661
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 258, 575
BstFNI CGCG 2 cut(s) 241, 489
BstKTI GATC 6 cut(s) 31, 125, 295, 441, 517, 764
BstMBI GATC 6 cut(s) 28, 122, 292, 438, 514, 761
BstMWI GCNNNNNNNGC 2 cut(s) 580, 617
BstNSI RCATGY 2 cut(s) 528, 789
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 241, 489
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 3 cut(s) 50, 163, 186
BstX2I RGATCY 2 cut(s) 28, 761
BstYI RGATCY 2 cut(s) 28, 761
BsuRI GGCC 3 cut(s) 5, 106, 402
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 529
Cfr10I RCCGGY 2 cut(s) 220, 402
CviAII CATG 5 cut(s) 246, 525, 530, 675, 786
DdeI CTNAG 2 cut(s) 258, 575
DpnI GATC 6 cut(s) 30, 124, 294, 440, 516, 763
DpnII GATC 6 cut(s) 28, 122, 292, 438, 514, 761
EaeI YGGCCR 2 cut(s) 3, 400
Eam1104I CTCTTC 2 cut(s) 371, 661
EarI CTCTTC 2 cut(s) 371, 661
Eco130I CCWWGG 1 cut(s) 702
Eco147I AGGCCT 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 5 cut(s) 249, 528, 533, 678, 789
FaiI YATR 9 cut(s) 11, 24, 247, 526, 531, 590, 648, 676, 787
FatI CATG 5 cut(s) 245, 524, 529, 674, 785
FauI CCCGC 1 cut(s) 484
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 609
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 3 cut(s) 780, 807, 817
GluI GCNGC 1 cut(s) 609
HaeIII GGCC 3 cut(s) 5, 106, 402
HapII CCGG 2 cut(s) 221, 403
Hin1II CATG 5 cut(s) 249, 528, 533, 678, 789
HinfI GANTC 3 cut(s) 214, 232, 719
HpaII CCGG 2 cut(s) 221, 403
HphI GGTGA 3 cut(s) 139, 241, 299
Hpy166II GTNNAC 2 cut(s) 331, 461
Hpy188I TCNGA 4 cut(s) 519, 553, 666, 741
Hpy188III TCNNGA 5 cut(s) 199, 344, 442, 512, 530
Hpy8I GTNNAC 2 cut(s) 331, 461
HpyAV CCTTC 5 cut(s) 43, 77, 558, 661, 788
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 3 cut(s) 191, 611, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 617
HpyF3I CTNAG 2 cut(s) 258, 575
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 249, 528, 533, 678, 789
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 6 cut(s) 28, 122, 292, 438, 514, 761
LpnPI CCDG 2 cut(s) 234, 416
Lsp1109I GCAGC 1 cut(s) 595
MaeI CTAG 3 cut(s) 780, 807, 817
MaeII ACGT 1 cut(s) 333
MalI GATC 6 cut(s) 30, 124, 294, 440, 516, 763
MboI GATC 6 cut(s) 28, 122, 292, 438, 514, 761
MflI RGATCY 2 cut(s) 28, 761
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 44, 507, 612, 694, 746, 756
MluI ACGCGT 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 241, 728
MmeI TCCRAC 1 cut(s) 260
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 390
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 433
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 221, 403
MvnI CGCG 2 cut(s) 241, 489
MwoI GCNNNNNNNGC 2 cut(s) 580, 617
NdeII GATC 6 cut(s) 28, 122, 292, 438, 514, 761
NlaIII CATG 5 cut(s) 249, 528, 533, 678, 789
NmeAIII GCCGAG 1 cut(s) 564
NspI RCATGY 2 cut(s) 528, 789
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 2 cut(s) 240, 727
PpsI GAGTC 2 cut(s) 240, 727
Psp1406I AACGTT 1 cut(s) 333
PsuI RGATCY 2 cut(s) 28, 761
RseI CAYNNNNRTG 1 cut(s) 433
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 6 cut(s) 28, 122, 292, 438, 514, 761
SchI GAGTC 2 cut(s) 241, 728
SduI GDGCHC 1 cut(s) 41
SetI ASST 8 cut(s) 54, 88, 336, 415, 504, 545, 576, 672
SmiMI CAYNNNNRTG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 6 cut(s) 44, 507, 612, 694, 746, 756
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 477, 489
SspMI CTAG 3 cut(s) 780, 807, 817
StuI AGGCCT 1 cut(s) 106
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 336
TaqI TCGA 5 cut(s) 366, 441, 498, 513, 725
TasI AATT 6 cut(s) 44, 507, 612, 694, 746, 756
TfiI GAWTC 1 cut(s) 214
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 126, 234
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 3 cut(s) 507, 694, 746
XceI RCATGY 2 cut(s) 528, 789
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 3 cut(s) 780, 807, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.