Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270923.1

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 815

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 602 bp

atgccaaaagggattgacaaactctcttgccttgaagttctggaaggttatgtgataggaggtccgaaaagaactccctgcagagttggtgatcttgccaagttgaagagactaaagcggctcagcatacacatggggaatgaggctgaagttaaggagggggaattggaggagttggagaaaattgaatctctttgccgcctaaaattatcatggggagtggttgctccaaagttgagaaagaaggtctctcaacagtccttaaaactctcatttccaccagatttagaaaaattagaacttcaaggcatccccctaggacaagtacctgaatggttgaaccctagcaaattgaagaagttaaagaagctctacattaggggtggggggcttgatagtttgaatcataaggagactaaagattggaaagttgaagtcttgcgtctcaagtacttaaagaagctggagataggatttcaacagttgcagcaagagtttcctcatctgcggtacttggagaaaatcgactgccatctgagtcaaggggatacatatgataaagacattgtttggagcaaagtggaaggcgatatatcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

200

Amino Acids

22.95

Weight (kDa)

9.11

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	118, 199, 508
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	327, 452, 512
AgsI	TTSAA	9 cut(s)	35, 106, 188, 305, 340, 355, 403, 434, 479
AluBI	AGCT	2 cut(s)	370, 463
AluI	AGCT	2 cut(s)	370, 463
Alw26I	GTCTC	4 cut(s)	103, 253, 407, 449
ApeKI	GCWGC	1 cut(s)	487
AspA2I	CCTAGG	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	4 cut(s)	103, 253, 407, 449
BfaI	CTAG	2 cut(s)	317, 345
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	3 cut(s)	119, 199, 488
BlnI	CCTAGG	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	3 cut(s)	120, 200, 489
BmcAI	AGTACT	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	136, 527
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	499
BsmAI	GTCTC	4 cut(s)	103, 253, 407, 449
BsmBI	CGTCTC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	122
BspACI	CCGC	3 cut(s)	118, 199, 508
BspCNI	CTCAG	2 cut(s)	135, 528
BspMAI	CTGCAG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	258, 483
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	122, 536
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	4 cut(s)	103, 253, 407, 449
BstMBI	GATC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	326, 451, 511
CviAII	CATG	2 cut(s)	133, 213
CviJI	RGCY	5 cut(s)	121, 146, 370, 391, 463
CviKI_1	RGCY	5 cut(s)	121, 146, 370, 391, 463
CviQI	GTAC	3 cut(s)	326, 451, 511
DdeI	CTNAG	2 cut(s)	122, 536
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	2 cut(s)	136, 216
FaiI	YATR	8 cut(s)	51, 128, 134, 214, 408, 553, 555, 593
FatI	CATG	2 cut(s)	132, 212
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	119, 199, 488
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	119, 199, 488
FspBI	CTAG	2 cut(s)	317, 345
GluI	GCNGC	3 cut(s)	119, 199, 488
GsuI	CTGGAG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	136, 216
HinfI	GANTC	3 cut(s)	188, 403, 538
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	3 cut(s)	66, 537, 598
Hpy188III	TCNNGA	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	38, 238, 578
HpyCH4III	ACNGT	2 cut(s)	258, 483
HpyCH4V	TGCA	2 cut(s)	81, 487
HpyF3I	CTNAG	2 cut(s)	122, 536
Hsp92II	CATG	2 cut(s)	136, 216
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	232, 573
LpnPI	CCDG	5 cut(s)	26, 91, 294, 342, 449
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	317, 345
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	118, 367
MluCI	AATT	5 cut(s)	164, 183, 206, 293, 350
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	53, 136, 151, 163, 510
MseI	TTAA	4 cut(s)	153, 263, 362, 455
MslI	CAYNNNNRTG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	136, 216
PfeI	GAWTC	2 cut(s)	188, 403
PkrI	GCNGC	3 cut(s)	120, 200, 489
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	327, 452, 512
RsaNI	GTAC	3 cut(s)	326, 451, 511
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	153, 263, 362, 455
SatI	GCNGC	3 cut(s)	119, 199, 488
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	1 cut(s)	547
SetI	ASST	6 cut(s)	49, 64, 249, 331, 372, 465
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	164, 183, 206, 293, 350
SsiI	CCGC	3 cut(s)	118, 199, 508
SspMI	CTAG	2 cut(s)	317, 345
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	258, 483
TaqI	TCGA	1 cut(s)	525
TasI	AATT	5 cut(s)	164, 183, 206, 293, 350
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	2 cut(s)	121, 201
TfiI	GAWTC	2 cut(s)	188, 403
Tru1I	TTAA	4 cut(s)	153, 263, 362, 455
Tru9I	TTAA	4 cut(s)	153, 263, 362, 455
TseI	GCWGC	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	62
XmaJI	CCTAGG	1 cut(s)	316
XspI	CTAG	2 cut(s)	317, 345
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.