Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

19656314 .. 19656889

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATGAATCCAGCAGCTGCTGCTGGGTCCTTTCTTGAGCAATGCGACTATGGTGAAGGTACCTCACGTAGCTTGGGTAGAGCCACTAACGATCCTTCCAGTGATGATTATGACTTGAATACTCGTCAAGATGATAATGATCACATGGTTGGCGAGGGAAACACTCTGGAACCTGCAGCTGGTTACGACTCTCAGTATGAAGATGGGGAGCTGAGGGAGTCATATGTACCATATTGGGAGGAGAATGAAATTGATGACGTAGAAGTTGAATGTGTTGACTACGGTTCTGATACATGTGACAGTGAAGCTGATGATGACTCTGTATCAGGGAAAGTTGGAATGGGACTTGAATGCAGAGAAACTGAATTATTTGGGGAGTCGAGGAAAATTAACAGTAACATGAAGCTTGTGAGAGGATTGAGTCCAGGATCTGATAATACGTGTGAGAAAAACGAACATGCTTTGAGACAATGTTCCGTTGGCTCGAAGACGAAAACTTCTGGATCGATCAATTGCCTGGTGATTCTGAAGCTTCTTCAAACAGAACTGCGGAAGCAATTGAGGGGTGCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.94

Weight (kDa)

4.28

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	3 cut(s)	86, 436, 511
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	61, 228
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	2 cut(s)	293, 440
AgsI	TTSAA	4 cut(s)	118, 269, 350, 539
AjnI	CCWGG	2 cut(s)	424, 516
AluBI	AGCT	7 cut(s)	17, 72, 179, 211, 308, 406, 532
AluI	AGCT	7 cut(s)	17, 72, 179, 211, 308, 406, 532
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	86, 436, 511
AlwNI	CAGNNNCTG	3 cut(s)	17, 20, 431
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	4 cut(s)	14, 17, 20, 176
Asp718I	GGTACC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	65, 532
AvaII	GGWCC	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	4, 7, 26, 188
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	426, 518
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	4 cut(s)	15, 18, 21, 177
BlsI	GCNGC	4 cut(s)	16, 19, 22, 178
Bme1390I	CCNGG	2 cut(s)	426, 518
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	28, 61, 171
BmrFI	CCNGG	2 cut(s)	426, 518
BpiI	GAAGAC	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	506
BsaAI	YACGTR	2 cut(s)	68, 441
BsaBI	GATNNNNATC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	426, 518
BseCI	ATCGAT	1 cut(s)	506
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	203, 206
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	4 cut(s)	4, 7, 26, 188
BseYI	CCCAGC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	91, 139, 428, 503, 507
BspACI	CCGC	1 cut(s)	550
BspCNI	CTCAG	2 cut(s)	204, 205
BspDI	ATCGAT	1 cut(s)	506
BspLI	GGNNCC	3 cut(s)	28, 61, 171
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	86, 436, 511
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	99
BssMI	GATC	5 cut(s)	91, 139, 428, 503, 507
Bst2UI	CCWGG	2 cut(s)	426, 518
Bst4CI	ACNGT	4 cut(s)	284, 302, 395, 573
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	2 cut(s)	68, 441
BstDEI	CTNAG	2 cut(s)	192, 212
BstKTI	GATC	5 cut(s)	94, 142, 431, 506, 510
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	5 cut(s)	91, 139, 428, 503, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	426, 518
BstNSI	RCATGY	2 cut(s)	297, 461
BstSCI	CCNGG	2 cut(s)	424, 516
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	4 cut(s)	4, 7, 26, 188
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	106, 307
BveI	ACCTGC	1 cut(s)	181
CaiI	CAGNNNCTG	3 cut(s)	17, 20, 431
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	60, 227
CviAII	CATG	4 cut(s)	145, 294, 400, 458
CviJI	RGCY	9 cut(s)	17, 72, 83, 179, 211, 308, 406, 483, 532
CviKI_1	RGCY	9 cut(s)	17, 72, 83, 179, 211, 308, 406, 483, 532
CviQI	GTAC	2 cut(s)	60, 227
DdeI	CTNAG	2 cut(s)	192, 212
DpnI	GATC	5 cut(s)	93, 141, 430, 505, 509
DpnII	GATC	5 cut(s)	91, 139, 428, 503, 507
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	424, 516
FaeI	CATG	4 cut(s)	148, 297, 403, 461
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	144, 293, 399, 457
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	15, 18, 21, 177
Fsp4HI	GCNGC	4 cut(s)	15, 18, 21, 177
GluI	GCNGC	4 cut(s)	15, 18, 21, 177
GsaI	CCCAGC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	148, 297, 403, 461
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	404, 530
HinfI	GANTC	7 cut(s)	7, 188, 218, 317, 377, 421, 523
HphI	GGTGA	2 cut(s)	65, 532
Hpy166II	GTNNAC	2 cut(s)	277, 569
Hpy188I	TCNGA	3 cut(s)	289, 433, 528
Hpy188III	TCNNGA	4 cut(s)	35, 128, 167, 501
Hpy8I	GTNNAC	2 cut(s)	277, 569
HpyAV	CCTTC	2 cut(s)	50, 105
HpyCH4III	ACNGT	4 cut(s)	284, 302, 395, 573
HpyCH4IV	ACGT	3 cut(s)	67, 258, 440
HpyCH4V	TGCA	3 cut(s)	176, 354, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	192, 212
HpySE526I	ACGT	3 cut(s)	67, 258, 440
Hsp92II	CATG	4 cut(s)	148, 297, 403, 461
KpnI	GGTACC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	91, 139, 428, 503, 507
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	4 cut(s)	4, 7, 26, 188
MaeII	ACGT	3 cut(s)	67, 258, 440
MaeIII	GTNAC	3 cut(s)	182, 296, 395
MalI	GATC	5 cut(s)	93, 141, 430, 505, 509
MboI	GATC	5 cut(s)	91, 139, 428, 503, 507
MboII	GAAGA	3 cut(s)	212, 499, 527
MfeI	CAATTG	2 cut(s)	511, 557
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	5 cut(s)	249, 365, 387, 511, 557
MlyI	GAGTC	5 cut(s)	182, 227, 311, 386, 430
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	7 cut(s)	73, 148, 207, 232, 375, 407, 555
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	17, 179
MspR9I	CCNGG	2 cut(s)	426, 518
MunI	CAATTG	2 cut(s)	511, 557
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	426, 518
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	91, 139, 428, 503, 507
NlaIII	CATG	4 cut(s)	148, 297, 403, 461
NlaIV	GGNNCC	3 cut(s)	28, 61, 171
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	2 cut(s)	297, 461
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	7, 523
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	4 cut(s)	16, 19, 22, 178
PleI	GAGTC	5 cut(s)	182, 226, 311, 385, 429
PpsI	GAGTC	5 cut(s)	182, 226, 311, 385, 429
Ppu21I	YACGTR	2 cut(s)	68, 441
PpuMI	RGGWCCY	1 cut(s)	27
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	424, 516
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	424, 516
PspN4I	GGNNCC	3 cut(s)	28, 61, 171
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	3 cut(s)	17, 20, 431
PsuI	RGATCY	1 cut(s)	428
PvuII	CAGCTG	2 cut(s)	17, 179
RsaI	GTAC	2 cut(s)	61, 228
RsaNI	GTAC	2 cut(s)	60, 227
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	4 cut(s)	15, 18, 21, 177
Sau3AI	GATC	5 cut(s)	91, 139, 428, 503, 507
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	5 cut(s)	182, 227, 311, 386, 430
ScrFI	CCNGG	2 cut(s)	426, 518
SduI	GDGCHC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	249, 365, 387, 511, 557
SsiI	CCGC	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	424, 516
TaaI	ACNGT	4 cut(s)	284, 302, 395, 573
TaiI	ACGT	3 cut(s)	70, 261, 443
TaqI	TCGA	3 cut(s)	380, 485, 506
TasI	AATT	5 cut(s)	249, 365, 387, 511, 557
TfiI	GAWTC	2 cut(s)	7, 523
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	2 cut(s)	106, 307
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	4 cut(s)	14, 17, 20, 176
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	4 cut(s)	20, 213, 261, 416
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	106, 307
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	27
XceI	RCATGY	2 cut(s)	297, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.