Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020454.1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

2004 .. 3579

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020454.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgggagtttatatggctgatgaagacatagtagtcttggttcttcatggtttcccctcagagtttgctaccataaaaacttctatttctgagaggttcaggaatgaaatgatggcacatggtgatagtttcaaaaggacatgtgacattaatgctgctgatggctctgaatcaggaaaagtggaatgtagagaaactgaatcttgtgggatagaatctaggaaaattaacatggacatgcaggttatgcgaggattgagcccgggttctgataatatgtgtgaaaaagttgaacattgtgtgattgaaaatattttgagacaatcttcagtggggtcaaagacgagaacttctggatctgaactttttcttggtgattctgaagcttcatcaaacagaactacaaaagcaattgagggctgcacaataaggaagcatactagtgatagctttgatggtcgtaatggcaaagatcctgtcaaagttgatagatcaatgacatctgacaccgttattaatagaacctattatgccactgtatctattcctaaaaaggactctacatatgctgcaaatattattctgcaaaatgggaattgcattatgcaatctgtgtcaagcaatgatctcatgttcaaacaatgcacatctccaatatgtgatgacaattgccctggtgctgatcttgggaataatcaatgtactactaatggttctctagatcttaggaaccatgttggtggtaaaattctttgtccacaagaagggacgtatgcactacttggaagagcttcttttcttggaagttcaatgcgaatgatggtatctctatgtgttattatggttgaaagaaataatctgaaatttttgcctctcatcatgctacttcctcttatttcaaaggctgttggtaatgcattcaatgaaggcttttatgaaggcttccctgtgattgatcattctagaaatggagaaacacttgtccttggactattatttcttagtcacttgttggtatttctgcagaacttcaagttagtggactggcctatcggcattgttttggctgctggtgcattgaaaatatatgatgagatattcaatttcttgatacaagtgaaacttgctctattttcattgtggtgccaattgaagatgaacgatcggttccacttgattagttggaataatcactctaagcaacatgaaaaggaagtaagccattttgatgcaatagtgaaaatgaggcatcatgtcaatcactttgtatctacattacagcaatatggggagtcacagctatcacatgtatcatggtgcaagtttctatactcaaacacaaggtcaaatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

451

Amino Acids

50.37

Weight (kDa)

6.57

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	1143
AclWI	GGATC	2 cut(s)	364, 467
AcsI	RAATTY	2 cut(s)	747, 863
AcuI	CTGAAG	2 cut(s)	312, 402
AdeI	CACNNNGTG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	1 cut(s)	764
AflIII	ACRYGT	2 cut(s)	140, 1306
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	4 cut(s)	386, 450, 791, 1300
AluI	AGCT	4 cut(s)	386, 450, 791, 1300
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	364, 467
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	1046
ApeKI	GCWGC	4 cut(s)	155, 420, 569, 1067
ApoI	RAATTY	2 cut(s)	747, 863
ArsI	GACNNNNNNTTYG	3 cut(s)	462, 494, 1328
AseI	ATTAAT	2 cut(s)	150, 516
Asp700I	GAANNNNTTC	2 cut(s)	366, 790
AsuC2I	CCSGG	2 cut(s)	263, 264
AsuHPI	GGTGA	2 cut(s)	134, 386
AvaI	CYCGRG	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	1143
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	142, 407, 556, 1054
BccI	CCATC	4 cut(s)	106, 155, 449, 814
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	2 cut(s)	263, 264
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	4 cut(s)	219, 441, 719, 963
BfmI	CTRYAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	232
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	4 cut(s)	156, 421, 570, 1068
BlsI	GCNGC	4 cut(s)	157, 422, 571, 1069
Bme1390I	CCNGG	3 cut(s)	263, 264, 675
BmeT110I	CYCGRG	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	731, 1145, 1169
BmrFI	CCNGG	3 cut(s)	263, 264, 675
BmsI	GCATC	2 cut(s)	1219, 1258
BpiI	GAAGAC	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	263, 264
BsaJI	CCNNGG	3 cut(s)	262, 673, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	1049
Bse3DI	GCAATG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	262, 673, 985
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	72, 81
BseNI	ACTGG	1 cut(s)	1049
BseXI	GCAGC	4 cut(s)	142, 407, 556, 1054
BsgI	GTGCAG	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	1165
BshFI	GGCC	1 cut(s)	1048
BshNI	GGYRCC	1 cut(s)	1143
BsiEI	CGRYCG	1 cut(s)	1165
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	781
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	1 cut(s)	1048
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	2 cut(s)	71, 82
BspLI	GGNNCC	3 cut(s)	731, 1145, 1169
BspMAI	CTGCAG	1 cut(s)	1026
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	364, 467
BspQI	GCTCTTC	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	1143
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	1049
BssECI	CCNNGG	3 cut(s)	262, 673, 985
BssMI	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
BssT1I	CCWWGG	1 cut(s)	985
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	511, 538
Bst6I	CTCTTC	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstDEI	CTNAG	5 cut(s)	58, 90, 725, 1001, 1197
BstKTI	GATC	8 cut(s)	359, 475, 494, 628, 685, 724, 958, 1165
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
BstMCI	CGRYCG	1 cut(s)	1165
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 1073
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	3 cut(s)	144, 241, 1310
BstSCI	CCNGG	3 cut(s)	261, 262, 673
BstSFI	CTRYAG	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	142, 407, 556, 1054
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	3 cut(s)	356, 472, 721
BstXI	CCANNNNNNTGG	1 cut(s)	740
BstYI	RGATCY	3 cut(s)	356, 472, 721
BsuRI	GGCC	1 cut(s)	1048
BtsIMutI	CAGTG	2 cut(s)	336, 534
BveI	ACCTGC	1 cut(s)	232
Cfr9I	CCCGGG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	702
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	5 cut(s)	58, 90, 725, 1001, 1197
DpnI	GATC	8 cut(s)	358, 474, 493, 627, 684, 723, 957, 1164
DpnII	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
DraIII	CACNNNGTG	1 cut(s)	122
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	985
Eco24I	GRGCYC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	312, 402
Eco88I	CYCGRG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	985
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	985
FalI	AAGNNNNNCTT	4 cut(s)	778, 810, 1107, 1139
FaqI	GGGAC	1 cut(s)	781
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	4 cut(s)	156, 421, 570, 1068
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	156, 421, 570, 1068
FspBI	CTAG	4 cut(s)	219, 441, 719, 963
GluI	GCNGC	4 cut(s)	156, 421, 570, 1068
HaeIII	GGCC	1 cut(s)	1048
HapII	CCGG	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	6 cut(s)	170, 200, 215, 377, 557, 1292
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	134, 386
Hpy166II	GTNNAC	2 cut(s)	758, 1042
Hpy188I	TCNGA	8 cut(s)	61, 91, 169, 271, 361, 382, 505, 861
Hpy188III	TCNNGA	6 cut(s)	100, 174, 354, 719, 963, 1108
Hpy8I	GTNNAC	2 cut(s)	758, 1042
HpyAV	CCTTC	3 cut(s)	758, 920, 932
HpyCH4III	ACNGT	2 cut(s)	511, 538
HpyCH4IV	ACGT	1 cut(s)	770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 1073
HpyF3I	CTNAG	5 cut(s)	58, 90, 725, 1001, 1197
HpySE526I	ACGT	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
LguI	GCTCTTC	1 cut(s)	781
Lsp1109I	GCAGC	4 cut(s)	142, 407, 556, 1054
LweI	GCATC	2 cut(s)	1219, 1258
MaeI	CTAG	4 cut(s)	219, 441, 719, 963
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	3 cut(s)	143, 1004, 1293
MalI	GATC	8 cut(s)	358, 474, 493, 627, 684, 723, 957, 1164
MboI	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
MboII	GAAGA	5 cut(s)	35, 35, 318, 798, 1165
MfeI	CAATTG	3 cut(s)	411, 667, 1148
MflI	RGATCY	3 cut(s)	356, 472, 721
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	8 cut(s)	225, 411, 595, 667, 747, 863, 1102, 1148
MlyI	GAGTC	2 cut(s)	551, 1301
MmeI	TCCRAC	1 cut(s)	1163
MnlI	CCTC	7 cut(s)	67, 87, 245, 409, 882, 900, 1239
Mph1103I	ATGCAT	1 cut(s)	919
MroXI	GAANNNNTTC	2 cut(s)	366, 790
MseI	TTAA	3 cut(s)	150, 228, 516
MslI	CAYNNNNRTG	5 cut(s)	236, 441, 738, 1141, 1227
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	263, 264, 675
MunI	CAATTG	3 cut(s)	411, 667, 1148
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	247, 1073
NciI	CCSGG	2 cut(s)	263, 264
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
NlaIV	GGNNCC	3 cut(s)	731, 1145, 1169
NmuCI	GTSAC	3 cut(s)	143, 1004, 1293
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	3 cut(s)	144, 241, 1310
PciI	ACATGT	2 cut(s)	140, 1306
PciSI	GCTCTTC	1 cut(s)	781
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	2 cut(s)	366, 790
PfeI	GAWTC	4 cut(s)	170, 200, 215, 377
PkrI	GCNGC	4 cut(s)	157, 422, 571, 1069
Ple19I	CGATCG	1 cut(s)	1165
PleI	GAGTC	2 cut(s)	551, 1300
PpsI	GAGTC	2 cut(s)	551, 1300
PscI	ACATGT	2 cut(s)	140, 1306
PshBI	ATTAAT	2 cut(s)	150, 516
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	731, 1145, 1169
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PstI	CTGCAG	1 cut(s)	1026
PsuI	RGATCY	3 cut(s)	356, 472, 721
PvuI	CGATCG	1 cut(s)	1165
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
RseI	CAYNNNNRTG	5 cut(s)	236, 441, 738, 1141, 1227
SapI	GCTCTTC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	150, 228, 516
SatI	GCNGC	4 cut(s)	156, 421, 570, 1068
Sau3AI	GATC	8 cut(s)	356, 472, 491, 625, 682, 721, 955, 1162
SchI	GAGTC	2 cut(s)	551, 1301
ScrFI	CCNGG	3 cut(s)	263, 264, 675
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	9 cut(s)	98, 246, 388, 452, 527, 773, 793, 1302, 1346
SfaNI	GCATC	2 cut(s)	1219, 1258
SfcI	CTRYAG	1 cut(s)	1022
SmaI	CCCGGG	1 cut(s)	264
SmiMI	CAYNNNNRTG	5 cut(s)	236, 441, 738, 1141, 1227
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	8 cut(s)	225, 411, 595, 667, 747, 863, 1102, 1148
SspI	AATATT	2 cut(s)	313, 577
SspMI	CTAG	4 cut(s)	219, 441, 719, 963
StyD4I	CCNGG	3 cut(s)	261, 262, 673
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	2 cut(s)	511, 538
TaiI	ACGT	1 cut(s)	773
TasI	AATT	8 cut(s)	225, 411, 595, 667, 747, 863, 1102, 1148
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	170, 200, 215, 377
Tru1I	TTAA	3 cut(s)	150, 228, 516
Tru9I	TTAA	3 cut(s)	150, 228, 516
TscAI	CASTG	2 cut(s)	336, 541
TseFI	GTSAC	3 cut(s)	143, 1004, 1293
TseI	GCWGC	4 cut(s)	155, 420, 569, 1067
Tsp45I	GTSAC	3 cut(s)	143, 1004, 1293
TspDTI	ATGAA	9 cut(s)	35, 36, 120, 378, 939, 951, 1125, 1172, 1221
TspMI	CCCGGG	1 cut(s)	262
TspRI	CASTG	2 cut(s)	336, 541
VspI	ATTAAT	2 cut(s)	150, 516
XapI	RAATTY	2 cut(s)	747, 863
XbaI	TCTAGA	2 cut(s)	718, 962
XceI	RCATGY	3 cut(s)	144, 241, 1310
XmaI	CCCGGG	1 cut(s)	262
XmnI	GAANNNNTTC	2 cut(s)	366, 790
XspI	CTAG	4 cut(s)	219, 441, 719, 963
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.