RchiOBHm_Chr5g0081641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001112
Physical Location & Seq
Forward (+)
87590045 .. 87590700
656 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35589

Sequence Viewer

Length: 573 bp
ATGAATACATATGGTATGACTCCTTTTAATGTTTGTATGAATGTTTGGAAGGAGCCTTGTGATATAGTGCAGCCTACGGTTTATAATGTGGAACAGGGATTGAAAGCATCACCTGACTCTAAAATAAGTGATGGCAGATGTGGTCCTGCTGATAATGCTCTAGGATCTTTAAAAGATGCAGTTGTGGAGGAGGTTTCCTGTGAGATTGGCAGCACTGTTGTAGATAATAATGGTAAAGGCCCTGGTGCAACGTCCAGCTTCCTTGATGATCCAAAATATCCTGAAGAGATGTCAGGTGGTGAGAGCTGTCACTTACAGAAGTGTTGTCCTGAGGTCAAGCCTGTAGGCAAAACAGAAGATGTGATTAAGGCTGCACCAGGTGCCTCCGTTGGTGAAAGCCTCTCTTTGGTAACTTTAATTGCAAAGGATCTGGTTGAATCTGCATCTCATAGGCTTGTTCCAAGTCATCCATACTCTGCCATTACTACCTCACAGAAGACTACATCTTCAACAAGTAGATCAAGTGGTTGTATGGCTCAATATAATAGTGGAAATGGTGGTACATACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

19.9

Weight (kDa)

4.92

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 380
AclWI GGATC 3 cut(s) 172, 263, 435
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 380
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 3 cut(s) 103, 437, 510
AjnI CCWGG 2 cut(s) 241, 376
AluBI AGCT 2 cut(s) 258, 306
AluI AGCT 2 cut(s) 258, 306
AlwI GGATC 3 cut(s) 172, 263, 435
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 70, 210, 371
AspS9I GGNCC 2 cut(s) 143, 239
AsuHPI GGTGA 3 cut(s) 102, 311, 404
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 330
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 503
BbvI GCAGC 3 cut(s) 82, 222, 358
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 2 cut(s) 243, 378
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 3 cut(s) 71, 211, 372
BlsI GCNGC 3 cut(s) 72, 212, 373
Bme1390I CCNGG 2 cut(s) 243, 378
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 239
BmiI GGNNCC 2 cut(s) 54, 382
BmrFI CCNGG 2 cut(s) 243, 378
BmsI GCATC 3 cut(s) 116, 166, 452
BpiI GAAGAC 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse21I CCTNAGG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 243, 378
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 82, 222, 358
BsgI GTGCAG 2 cut(s) 89, 357
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 406
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 4 cut(s) 164, 268, 427, 518
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 54, 382
BspPI GGATC 3 cut(s) 172, 263, 435
BspT107I GGYRCC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 4 cut(s) 164, 268, 427, 518
Bst2UI CCWGG 2 cut(s) 243, 378
Bst4CI ACNGT 2 cut(s) 79, 217
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 4 cut(s) 167, 271, 430, 521
BstMBI GATC 4 cut(s) 164, 268, 427, 518
BstMWI GCNNNNNNNGC 2 cut(s) 155, 380
BstNI CCWGG 2 cut(s) 243, 378
BstSCI CCNGG 2 cut(s) 241, 376
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 82, 222, 358
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 2 cut(s) 164, 427
BstYI RGATCY 2 cut(s) 164, 427
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 143, 239
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 561
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 166, 270, 429, 520
DpnII GATC 4 cut(s) 164, 268, 427, 518
DraI TTTAAA 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 241, 376
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 71, 211, 372
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 3 cut(s) 71, 211, 372
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 71, 211, 372
HaeIII GGCC 1 cut(s) 240
HinfI GANTC 3 cut(s) 19, 116, 437
HphI GGTGA 3 cut(s) 102, 311, 404
Hpy188III TCNNGA 2 cut(s) 281, 329
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 79, 217
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 6 cut(s) 70, 179, 248, 374, 422, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 380
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 251
Kzo9I GATC 4 cut(s) 164, 268, 427, 518
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 3 cut(s) 82, 222, 358
LweI GCATC 3 cut(s) 116, 166, 452
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 308, 409
MalI GATC 4 cut(s) 166, 270, 429, 520
MboI GATC 4 cut(s) 164, 268, 427, 518
MboII GAAGA 4 cut(s) 296, 368, 498, 508
MflI RGATCY 2 cut(s) 164, 427
MluCI AATT 1 cut(s) 417
MlyI GAGTC 2 cut(s) 13, 110
MnlI CCTC 6 cut(s) 181, 184, 325, 394, 410, 499
MseI TTAA 4 cut(s) 27, 170, 366, 416
MspR9I CCNGG 2 cut(s) 243, 378
MvaI CCWGG 2 cut(s) 243, 378
MwoI GCNNNNNNNGC 2 cut(s) 155, 380
NdeI CATATG 1 cut(s) 10
NdeII GATC 4 cut(s) 164, 268, 427, 518
NlaIV GGNNCC 2 cut(s) 54, 382
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 72, 212, 373
PleI GAGTC 2 cut(s) 13, 110
PpsI GAGTC 2 cut(s) 13, 110
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 241, 376
PspGI CCWGG 2 cut(s) 241, 376
PspN4I GGNNCC 2 cut(s) 54, 382
PspPI GGNCC 2 cut(s) 143, 239
PsuI RGATCY 2 cut(s) 164, 427
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 27, 170, 366, 416
SatI GCNGC 3 cut(s) 71, 211, 372
Sau3AI GATC 4 cut(s) 164, 268, 427, 518
Sau96I GGNCC 2 cut(s) 143, 239
SchI GAGTC 2 cut(s) 13, 110
ScrFI CCNGG 2 cut(s) 243, 378
SetI ASST 9 cut(s) 115, 195, 254, 260, 298, 308, 336, 382, 491
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 3 cut(s) 116, 166, 452
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 143
Sse9I AATT 1 cut(s) 417
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 241, 376
TaaI ACNGT 2 cut(s) 79, 217
TaiI ACGT 1 cut(s) 254
TasI AATT 1 cut(s) 417
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 4 cut(s) 27, 170, 366, 416
Tru9I TTAA 4 cut(s) 27, 170, 366, 416
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 70, 210, 371
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 17, 53
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 143
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.