Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027363.1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

9388 .. 9948

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027363.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcaactggcaatgtttgcagcattcagaattataacaatgatactggtctcgaggaggttgaagttggtgaaggaaaagaagaacagacttgtttagctcaagaaactcaaaagacttcaaggcatgaaagagatcttcacatgcatagtgatttagaaaatgtatgcgctaagaaggtagaggtttccgggagctgcttagaggtaatagatatggcatgtgacactgaagatggagagttgagggaatcagatgtgccttattgggaggagaatgattttgaagaaattgaacatgttgattatggttctgatacatatgacactaatgctgctaatggaaaaatggaatgtagagaaactgaattttgtgggatagaatctaggaacattaacatcaacgtgcaggttgggcgaggattaagcctaggttacgatattatgtgtggaaaagttgaacattgtgcaattggaaatgctttgagacaatcttcagtgggttcaaagacgagaacttctggagctgaacaattgcccggagatatatgcactacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

4.36

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	2 cut(s)	252, 480
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	65, 123, 287, 296, 461, 507
AluBI	AGCT	3 cut(s)	101, 198, 527
AluI	AGCT	3 cut(s)	101, 198, 527
Alw26I	GTCTC	2 cut(s)	56, 481
Ama87I	CYCGRG	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	21, 198, 335
ApoI	RAATTY	1 cut(s)	368
AspA2I	CCTAGG	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	173
AsuC2I	CCSGG	2 cut(s)	193, 540
AsuHPI	GGTGA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	53
AvrII	CCTAGG	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	33, 185, 322
BccI	CCATC	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	193, 540
BcoDI	GTCTC	2 cut(s)	56, 481
BfaI	CTAG	2 cut(s)	387, 431
BfuAI	ACCTGC	1 cut(s)	400
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	22, 199, 336
BlnI	CCTAGG	1 cut(s)	430
BlsI	GCNGC	3 cut(s)	23, 200, 337
Bme1390I	CCNGG	2 cut(s)	193, 540
BmeT110I	CYCGRG	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	193, 540
BpmI	CTGGAG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	193, 540
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	13, 52
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	13, 52
BseRI	GAGGAG	2 cut(s)	71, 287
BseXI	GCAGC	3 cut(s)	33, 185, 322
BsgI	GTGCAG	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	192, 540
BsmAI	GTCTC	2 cut(s)	56, 481
BsmI	GAATGC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	13, 52
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	174, 202, 558
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	56, 481
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 415
BstNSI	RCATGY	3 cut(s)	148, 225, 302
BstSCI	CCNGG	2 cut(s)	191, 538
BstV1I	GCAGC	3 cut(s)	33, 185, 322
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	228, 504
BveI	ACCTGC	1 cut(s)	400
CfoI	GCGC	1 cut(s)	173
CviAII	CATG	4 cut(s)	128, 145, 222, 299
CviJI	RGCY	4 cut(s)	101, 198, 429, 527
CviKI_1	RGCY	4 cut(s)	101, 198, 429, 527
DdeI	CTNAG	3 cut(s)	174, 202, 558
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	252, 480
Eco88I	CYCGRG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	4 cut(s)	131, 148, 225, 302
FatI	CATG	4 cut(s)	127, 144, 221, 298
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	22, 199, 336
Fsp4HI	GCNGC	3 cut(s)	22, 199, 336
FspBI	CTAG	2 cut(s)	387, 431
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	22, 199, 336
GsuI	CTGGAG	1 cut(s)	543
HapII	CCGG	2 cut(s)	192, 540
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	4 cut(s)	131, 148, 225, 302
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	251, 383
HpaII	CCGG	2 cut(s)	192, 540
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	30, 256, 316
Hpy188III	TCNNGA	3 cut(s)	53, 104, 522
HpyAV	CCTTC	2 cut(s)	68, 172
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	21, 148, 409, 470, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 415
HpyF3I	CTNAG	3 cut(s)	174, 202, 558
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	4 cut(s)	131, 148, 225, 302
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	195, 524
LpnPI	CCDG	5 cut(s)	33, 205, 395, 507, 553
Lsp1109I	GCAGC	3 cut(s)	33, 185, 322
MaeI	CTAG	2 cut(s)	387, 431
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	224, 434
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	5 cut(s)	95, 131, 245, 299, 486
MfeI	CAATTG	2 cut(s)	471, 533
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	5 cut(s)	31, 291, 368, 471, 533
MnlI	CCTC	7 cut(s)	49, 52, 178, 199, 240, 265, 413
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	2 cut(s)	396, 425
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	2 cut(s)	192, 540
MspR9I	CCNGG	2 cut(s)	193, 540
MunI	CAATTG	2 cut(s)	471, 533
Mva1269I	GAATGC	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	18, 415
NciI	CCSGG	2 cut(s)	193, 540
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	131, 148, 225, 302
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	3 cut(s)	148, 225, 302
PaeR7I	CTCGAG	1 cut(s)	53
PciI	ACATGT	1 cut(s)	298
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	251, 383
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	23, 200, 337
PscI	ACATGT	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	396, 425
SatI	GCNGC	3 cut(s)	22, 199, 336
Sau3AI	GATC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	193, 540
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	53, 102
SmoI	CTYRAG	2 cut(s)	53, 102
Sse9I	AATT	5 cut(s)	31, 291, 368, 471, 533
SspMI	CTAG	2 cut(s)	387, 431
StyD4I	CCNGG	2 cut(s)	191, 538
StyI	CCWWGG	1 cut(s)	430
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	31, 291, 368, 471, 533
TfiI	GAWTC	2 cut(s)	251, 383
Tru1I	TTAA	2 cut(s)	396, 425
Tru9I	TTAA	2 cut(s)	396, 425
TscAI	CASTG	2 cut(s)	235, 504
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	21, 198, 335
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	235, 504
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	3 cut(s)	148, 225, 302
XhoI	CTCGAG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	430
XspI	CTAG	2 cut(s)	387, 431
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.