Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

64061534 .. 64062711

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATATTAAATTTGTCAAGCAATCCATTATATTATATGCCACGCTTCCTGTTTCCCTCAAGAACTTCTCTACATCCATTCAATATCTGGATATGAGCAGTTGCAACATAGGGGGTAACATTCCCCACGGTATTGGCAACTTGAGCAACTTGACAGTCTTAGACTTAGGATACAATCAACTGAGTGGATCAATTCCAACTACAATGGGAAGACTACAGAACCTCCAAGGTTTGTACTTGACTGATAACAAATTGCAAGGATTTATTCCGGATGAACTTTGTCAACTAAACAATGTAGTTGACTTAGTTTTGGGTGGGTCCAATTCTTTAACTTCAACAGTACCATCTACGGTGTGGGGACTTACATATATCTTACACATAAACTTGTCATCCAATTCTCTACTTGGTCCTATCTCAGCAGATGTTGGAAATTTAAGAGTTGTCACAAATATAGATTTGTCAAGCCACAACTTTTCAAGTACTATACCAAGCAACATTGGGTGGCTTGAAAACTTGGTTAATCTCTCCTTGGCAAATAACAATCTTGAAGGCCCAATTCCCAGTTCATTTGGAAACTTAGTAAGCCTGGAGCTCTTAGATCTATCCAGAAACAATCTATCTGGAATCATTCCAGAGTCTTTAGAAGCGCTCTTGCATCTCAGGTATCTGAATTTGTCTTTTAACAAACTCCATGGAGAAATTCCAACAGGTGGACCTTTCAAAAACTTCTCTGTTCAGTCATTTCTCTCAAATGATGGACTATGTGGTGCATCCCAGCTTGATTTTCTACCATGCAGAACCCCTGTACAATATTCAAGGACAGCTAGTTCATCTATGTTGAAATATATTATTCCAGGGATGTTGGCAGCAATGCTTGTATTGACCTTCATATGGTTGTTCACACTACGCAAAAAAAGGGATGCAGAGGTTGCAATAGAGCATACCTTAATACCTGAACTTCTTCGGAAGAAAGTTACATACCAAGAAATTCTAAGTGCTATAAATGGCTTCAATGAAACCAACTTACTTGGCTCTGGGGGATTTGGCTCAGTGTATAAAGGAATACTATCAAATGGGATAGCGGTTGCTATAAAGGTGTTCAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

369

Amino Acids

40.03

Weight (kDa)

6.3

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	27 - 85	1.9e-07	Leucine rich repeat
LRR_14	PF23598	27 - 102	1.9e-06	Leucine-rich repeat region
LRR_8	PF13855	49 - 106	1.2e-07	Leucine rich repeat
LRR_14	PF23598	110 - 230	1e-08	Leucine-rich repeat region
LRR_8	PF13855	171 - 230	4.6e-11	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	1 cut(s)	1082
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	5 cut(s)	11, 430, 670, 699, 987
AfaI	GTAC	4 cut(s)	236, 342, 481, 807
AfeI	AGCGCT	1 cut(s)	648
AfiI	CCNNNNNNNGG	2 cut(s)	710, 891
AjnI	CCWGG	2 cut(s)	585, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
AluBI	AGCT	3 cut(s)	592, 778, 824
AluI	AGCT	3 cut(s)	592, 778, 824
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	648
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	5 cut(s)	11, 430, 670, 699, 987
Asp700I	GAANNNNTTC	1 cut(s)	960
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	4 cut(s)	318, 407, 551, 713
AvaII	GGWCC	3 cut(s)	318, 407, 713
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	878
BccI	CCATC	2 cut(s)	352, 749
BciT130I	CCWGG	2 cut(s)	587, 855
BciVI	GTATCC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	1 cut(s)	867
BlsI	GCNGC	1 cut(s)	868
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	587, 855
Bme18I	GGWCC	3 cut(s)	318, 407, 713
BmgT120I	GGNCC	4 cut(s)	318, 407, 551, 713
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	587, 855
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	664, 779, 910
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	44, 163
BsaJI	CCNNGG	5 cut(s)	127, 226, 528, 691, 854
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 891
Bse1I	ACTGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	587, 855
BseDI	CCNNGG	5 cut(s)	127, 226, 528, 691, 854
BseGI	GGATG	6 cut(s)	74, 277, 389, 770, 864, 925
BseLI	CCNNNNNNNGG	2 cut(s)	710, 891
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	4 cut(s)	173, 429, 673, 1062
BseNI	ACTGG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	878
BseYI	CCCAGC	1 cut(s)	774
BshFI	GGCC	1 cut(s)	552
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	710, 891
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp13I	TCCGGA	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	2 cut(s)	188, 598
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	1 cut(s)	1082
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	4 cut(s)	174, 428, 672, 1061
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	876
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	561
BssECI	CCNNGG	5 cut(s)	127, 226, 528, 691, 854
BssMI	GATC	2 cut(s)	188, 598
BssT1I	CCWWGG	3 cut(s)	226, 528, 691
Bst2UI	CCWGG	2 cut(s)	587, 855
Bst4CI	ACNGT	4 cut(s)	131, 157, 340, 352
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	805
BstDSI	CCRYGG	2 cut(s)	127, 691
BstF5I	GGATG	6 cut(s)	74, 277, 389, 770, 864, 925
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	2 cut(s)	191, 601
BstMBI	GATC	2 cut(s)	188, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 929
BstNI	CCWGG	2 cut(s)	587, 855
BstSCI	CCNGG	2 cut(s)	585, 853
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	878
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	2 cut(s)	127, 691
BtsCI	GGATG	6 cut(s)	74, 277, 389, 770, 864, 925
BtsIMutI	CAGTG	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	4 cut(s)	318, 407, 551, 713
Csp6I	GTAC	4 cut(s)	235, 341, 480, 806
CviAII	CATG	2 cut(s)	692, 792
CviQI	GTAC	4 cut(s)	235, 341, 480, 806
DpnI	GATC	2 cut(s)	190, 600
DpnII	GATC	2 cut(s)	188, 598
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	3 cut(s)	226, 528, 691
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	3 cut(s)	318, 407, 713
Eco47III	AGCGCT	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	585, 853
EcoT14I	CCWWGG	3 cut(s)	226, 528, 691
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	3 cut(s)	226, 528, 691
FaeI	CATG	2 cut(s)	695, 795
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	2 cut(s)	691, 791
FauNDI	CATATG	1 cut(s)	890
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	6 cut(s)	61, 284, 376, 757, 871, 932
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	1 cut(s)	867
GsaI	CCCAGC	1 cut(s)	778
GsuI	CTGGAG	1 cut(s)	608
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	2 cut(s)	695, 795
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	2 cut(s)	284, 301
HindII	GTYRAC	2 cut(s)	284, 301
HinfI	GANTC	2 cut(s)	624, 635
HpaII	CCGG	1 cut(s)	269
Hpy166II	GTNNAC	4 cut(s)	284, 301, 713, 900
Hpy188I	TCNGA	2 cut(s)	669, 966
Hpy188III	TCNNGA	7 cut(s)	61, 89, 269, 545, 606, 621, 632
Hpy8I	GTNNAC	4 cut(s)	284, 301, 713, 900
HpyAV	CCTTC	2 cut(s)	542, 895
HpyCH4III	ACNGT	4 cut(s)	131, 157, 340, 352
HpyCH4V	TGCA	7 cut(s)	105, 256, 655, 770, 795, 923, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 929
Hsp92II	CATG	2 cut(s)	695, 795
HspAI	GCGC	1 cut(s)	647
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	188, 598
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	1 cut(s)	878
LweI	GCATC	3 cut(s)	664, 779, 910
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	3 cut(s)	116, 442, 973
MalI	GATC	2 cut(s)	190, 600
MboI	GATC	2 cut(s)	188, 598
MboII	GAAGA	3 cut(s)	222, 953, 979
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	594
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	3 cut(s)	221, 406, 728
MnlI	CCTC	3 cut(s)	68, 233, 919
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	6 cut(s)	9, 329, 434, 519, 681, 947
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	587, 855
MvaI	CCWGG	2 cut(s)	587, 855
MwoI	GCNNNNNNNGC	2 cut(s)	144, 929
NcoI	CCATGG	1 cut(s)	691
NdeI	CATATG	1 cut(s)	890
NdeII	GATC	2 cut(s)	188, 598
NlaIII	CATG	2 cut(s)	695, 795
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	1 cut(s)	624
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	585, 853
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	2 cut(s)	585, 853
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	4 cut(s)	318, 407, 551, 713
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	4 cut(s)	236, 342, 481, 807
RsaNI	GTAC	4 cut(s)	235, 341, 480, 806
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	6 cut(s)	9, 329, 434, 519, 681, 947
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	2 cut(s)	188, 598
Sau96I	GGNCC	4 cut(s)	318, 407, 551, 713
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	587, 855
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	3 cut(s)	664, 779, 910
SfcI	CTRYAG	1 cut(s)	215
SinI	GGWCC	3 cut(s)	318, 407, 713
SmlI	CTYRAG	2 cut(s)	59, 142
SmoI	CTYRAG	2 cut(s)	59, 142
SsiI	CCGC	1 cut(s)	1082
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	1 cut(s)	825
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	585, 853
StyI	CCWWGG	3 cut(s)	226, 528, 691
TaaI	ACNGT	4 cut(s)	131, 157, 340, 352
TatI	WGTACW	3 cut(s)	234, 479, 805
TfiI	GAWTC	1 cut(s)	624
Tru1I	TTAA	6 cut(s)	9, 329, 434, 519, 681, 947
Tru9I	TTAA	6 cut(s)	9, 329, 434, 519, 681, 947
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	288, 555, 819, 877, 1029
TspRI	CASTG	1 cut(s)	1056
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	3 cut(s)	318, 407, 713
XapI	RAATTY	5 cut(s)	11, 430, 670, 699, 987
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 351
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	1 cut(s)	825
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.