Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

294326 .. 295963

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgttcaaacaatgtacatctccaatatgtgatgacaattgccctggtggtagggactcaattgtagtaaatggagctctagataataccacaccttcaagagtttgcactcaaagtttggagagcagacctcaacttttgaactcaaagaaataccaatcttttgattgtttcactgatggcaaagctgatcttgggaataatcaatgtactgctaatggttctctagatcttaggaaccatgttggtagtaaaattctttgtccagaagaagggacgtatgcactacttggaagagcttcttttcttggaagctcaaggcgaatgatggtatctctatgtgttattatggttgaaataaataatctgaaatttttgcctctcatcatgctacttcctcttattttaatggctgttggtaattcctttaatgaaggcttgtatgaaggcttccctctgattgatcattctagaaatggagaaacacttgtccttggactattatttcttagtcacttgttggtacttctgcagaacttcaagttagtggactggcctatcggcattgttttgagtttcaactgttgcccactgcacaccagtctcatcttcctgccggccgcagccaccaatccgatttcactgtccctccaaaacccacagcagcatatcgaagcgcagcgattcactgcatcgcaagcccacctgcctttgcgtccctccaacccactgcaacccgccgagcgataccagcccaggccaccgaactccagcagcagcagccccggcctccgacctgcagcagcccaagcctccggcctccgacctgcagcagcccaagcctccgatcagccttcctccgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

288

Amino Acids

31.14

Weight (kDa)

7.55

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	714
Acc36I	ACCTGC	3 cut(s)	714, 805, 835
AciI	CCGC	3 cut(s)	621, 738, 861
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	255, 371
AfaI	GTAC	3 cut(s)	16, 211, 525
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	7, 99, 142, 356, 541, 580
AjnI	CCWGG	2 cut(s)	43, 755
AluBI	AGCT	4 cut(s)	77, 188, 299, 315
AluI	AGCT	4 cut(s)	77, 188, 299, 315
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	608
AoxI	GGCC	5 cut(s)	554, 618, 758, 787, 817
ApoI	RAATTY	2 cut(s)	255, 371
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	679
AsuC2I	CCSGG	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	2 cut(s)	173, 322
BciT130I	CCWGG	2 cut(s)	45, 757
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	3 cut(s)	80, 227, 471
BfmI	CTRYAG	3 cut(s)	530, 798, 828
BfuAI	ACCTGC	3 cut(s)	714, 805, 835
BglII	AGATCT	1 cut(s)	229
Bme1390I	CCNGG	3 cut(s)	45, 757, 786
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	45, 757, 786
BmsI	GCATC	1 cut(s)	701
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	786
BsaJI	CCNNGG	4 cut(s)	43, 493, 755, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	2 cut(s)	557, 600
BseBI	CCWGG	2 cut(s)	45, 757
BseDI	CCNNGG	4 cut(s)	43, 493, 755, 784
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	557, 600
BseX3I	CGGCCG	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	5 cut(s)	556, 620, 760, 789, 819
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	617, 786, 816
BslFI	GGGAC	4 cut(s)	68, 289, 631, 702
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	4 cut(s)	68, 289, 631, 702
BsnI	GGCC	5 cut(s)	556, 620, 760, 789, 819
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	190, 229, 463, 847
BspACI	CCGC	3 cut(s)	621, 738, 861
BspANI	GGCC	5 cut(s)	556, 620, 760, 789, 819
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	3 cut(s)	534, 802, 832
BspMI	ACCTGC	3 cut(s)	714, 805, 835
BspQI	GCTCTTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	557, 600
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	4 cut(s)	43, 493, 755, 784
BssMI	GATC	4 cut(s)	190, 229, 463, 847
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	45, 757
Bst4CI	ACNGT	2 cut(s)	584, 645
Bst6I	CTCTTC	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	618, 699
BstDEI	CTNAG	2 cut(s)	233, 509
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	4 cut(s)	193, 232, 466, 850
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	190, 229, 463, 847
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	6 cut(s)	698, 751, 780, 786, 809, 839
BstNI	CCWGG	2 cut(s)	45, 757
BstSCI	CCNGG	3 cut(s)	43, 755, 784
BstSFI	CTRYAG	3 cut(s)	530, 798, 828
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	5 cut(s)	556, 620, 760, 789, 819
BtgZI	GCGATG	1 cut(s)	678
BtsI	GCAGTG	3 cut(s)	590, 687, 728
BtsIMutI	CAGTG	5 cut(s)	174, 590, 641, 687, 728
BveI	ACCTGC	3 cut(s)	714, 805, 835
Cac8I	GCNNGC	2 cut(s)	618, 699
CfoI	GCGC	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	616
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	15, 210, 524
CviAII	CATG	2 cut(s)	242, 388
CviQI	GTAC	3 cut(s)	15, 210, 524
DdeI	CTNAG	2 cut(s)	233, 509
DpnI	GATC	4 cut(s)	192, 231, 465, 849
DpnII	GATC	4 cut(s)	190, 229, 463, 847
EaeI	YGGCCR	1 cut(s)	618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	77
EclXI	CGGCCG	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	43, 755
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	2 cut(s)	245, 391
FaiI	YATR	9 cut(s)	28, 243, 282, 340, 350, 389, 444, 669, 865
FalI	AAGNNNNNCTT	4 cut(s)	177, 209, 286, 318
FaqI	GGGAC	4 cut(s)	68, 289, 631, 702
FatI	CATG	2 cut(s)	241, 387
FauI	CCCGC	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	3 cut(s)	80, 227, 471
GlaI	GCGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	754
HaeIII	GGCC	5 cut(s)	556, 620, 760, 789, 819
HapII	CCGG	3 cut(s)	617, 786, 816
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	2 cut(s)	245, 391
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HinfI	GANTC	2 cut(s)	56, 684
HpaII	CCGG	3 cut(s)	617, 786, 816
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	6 cut(s)	369, 459, 636, 794, 824, 847
Hpy188III	TCNNGA	5 cut(s)	80, 99, 227, 266, 471
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	5 cut(s)	105, 266, 428, 440, 864
HpyCH4III	ACNGT	2 cut(s)	584, 645
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	8 cut(s)	108, 284, 532, 595, 692, 733, 800, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	698, 751, 780, 786, 809, 839
HpyF3I	CTNAG	2 cut(s)	233, 509
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	245, 391
HspAI	GCGC	1 cut(s)	677
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	190, 229, 463, 847
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	74
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	3 cut(s)	80, 227, 471
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	192, 231, 465, 849
MboI	GATC	4 cut(s)	190, 229, 463, 847
MboII	GAAGA	3 cut(s)	281, 306, 601
MfeI	CAATTG	2 cut(s)	37, 60
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	37, 60, 255, 371, 421
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	3 cut(s)	747, 817, 847
MroNI	GCCGGC	1 cut(s)	616
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	2 cut(s)	407, 429
MspI	CCGG	3 cut(s)	617, 786, 816
MspR9I	CCNGG	3 cut(s)	45, 757, 786
MunI	CAATTG	2 cut(s)	37, 60
MvaI	CCWGG	2 cut(s)	45, 757
MwoI	GCNNNNNNNGC	6 cut(s)	698, 751, 780, 786, 809, 839
NaeI	GCCGGC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	786
NdeII	GATC	4 cut(s)	190, 229, 463, 847
NgoMIV	GCCGGC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	245, 391
NlaIV	GGNNCC	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	766
NmuCI	GTSAC	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	684
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	43, 755
PspGI	CCWGG	2 cut(s)	43, 755
PspN4I	GGNNCC	1 cut(s)	239
PstI	CTGCAG	3 cut(s)	534, 802, 832
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	3 cut(s)	16, 211, 525
RsaNI	GTAC	3 cut(s)	15, 210, 524
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	407, 429
Sau3AI	GATC	4 cut(s)	190, 229, 463, 847
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	45, 757, 786
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	701
SfcI	CTRYAG	3 cut(s)	530, 798, 828
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	5 cut(s)	37, 60, 255, 371, 421
SsiI	CCGC	3 cut(s)	621, 738, 861
SspMI	CTAG	3 cut(s)	80, 227, 471
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	43, 755, 784
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	584, 645
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	672
TasI	AATT	5 cut(s)	37, 60, 255, 371, 421
TatI	WGTACW	2 cut(s)	14, 209
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	2 cut(s)	407, 429
Tru9I	TTAA	2 cut(s)	407, 429
TscAI	CASTG	5 cut(s)	181, 597, 648, 694, 735
TseFI	GTSAC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	447, 459
TspRI	CASTG	5 cut(s)	181, 597, 648, 694, 735
XapI	RAATTY	2 cut(s)	255, 371
XbaI	TCTAGA	3 cut(s)	79, 226, 470
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	3 cut(s)	80, 227, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.