Rmu_sc0000197.1_g000014

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000197.1
OG0001112
Physical Location & Seq
Forward (+)
56231 .. 60492
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000197.1_g000014.1.cds

Sequence Viewer

Length: 1818 bp
atgaattgggtgcaaaatgattctgccattctgtcgatacttgcttctactctatccaatgatgctctctacttcactattggaagtaagtcttctaaggaaatttgttgtcgacttaaggagaactatgttgattattcacagtataacataatgaatctcaaaaactccatatacaacatccaaaaaggctcagactctattgacaagtacttaattcgagtcaagtcaatatgtgatcaacttgctacgatggaagtttatatggctgatgaagacatagtagtctcggttcttcatggtttaccctcagagtctgctaccataaaaactgtaatgagaatcaaaacactaagctcctctatttcaacgaaagaattacgatctcttttgttgatcgctgaagatgagattgaacaaactgtgaagtctatttctgagaggttcaagaatgaaatgatggcacatggtgacagtttcaaaaggacatgtcacattaatgctgctgatggctctgtattaggaaaagtggaattggggtcaaagacgagaacttctggatctgaacaattgcttggtgattctgaagcttcttcaaacaaaactacagaagcaactgagggttacacaatgaggaagcatactggtgattgctttgatggtcgtaatggcaaagatcctatcaaagttgatagatcaatgacatctgacaccgtcattaatggaacctattatgccactgcatctattcctaaaaaagactatacatatgctgcaaatactattatgcaaaatgggaattgcattattaaatggagctctagacaatactacaccttcaagagtttgcactcaaaatttggagagcaggcctcaacttttgattgttccactgatggtaaagctgagcttgggaacaatcaatgtactgctaatggttctctagatcttaggaaccatgttggcggtaaaattctttgtccagaagaagggacaaccggcggtggaaccaccagaaccggttggaaacctattgaaccggccactgcaagctccatacaacccgcagcaaatattccaccagttcaccatcttccggacctccaatttccactaaaatttgggcgcttgatcatccaacagaaaaaccggcagaagaaggagaaaaaaaaagggaaaggaaaggaagcccaagcccaaggcagaggcccactgacacaggcccacagccacatcagcaccagaccccacagccacgtcagcagaacaataagcggccacgttagcatttgggggacccattgccacgtcagctcggtcagctcctggtcaacgccgatcaacgaccgcctgccacatttccggcgactttccaagcgattttttccggccaaattttccgacaacctatttcaagagcatattccgaaatccaattatagtcgcgccccaaatagagggtgccaagagcgaaaccctaatcttagggatacatttggacattctggtccatacaatcgctctacttgggaaggtaatcaccaaaataggcgaacacagaaccgaagaggtcaatgtggaaagagagagggaggcaacgcctctggccatgttggtggccccaccaacactaagagccatctaaatgacattttcaaagcgcctcaatcaatggagtttgagcaaagagatatatgttctcgatgtggagtgtctgattattgggcacacatttgtagagctcgcgaagaaattgtcaccgcctacaaagcatattgtgaagcaagagaagctcactatgtggaacaagaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 gag_pre-integrs

Protein Analysis

605

Amino Acids

67.53

Weight (kDa)

9.06

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 284, 1506
AccB1I GGYRCC 1 cut(s) 1461
AccI GTMKAC 1 cut(s) 112
AccII CGCG 2 cut(s) 1446, 1746
AccIII TCCGGA 1 cut(s) 1096
AciI CCGC 6 cut(s) 966, 1002, 1065, 1275, 1348, 1761
AclWI GGATC 2 cut(s) 568, 671
AcoI YGGCCR 4 cut(s) 1041, 1276, 1389, 1606
AcsI RAATTY 5 cut(s) 102, 857, 972, 1118, 1394
AcuI CTGAAG 2 cut(s) 423, 606
AdeI CACNNNGTG 2 cut(s) 470, 1801
AfaI GTAC 2 cut(s) 212, 928
AfiI CCNNNNNNNGG 3 cut(s) 989, 1096, 1457
AflII CTTAAG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 1019
AgsI TTSAA 9 cut(s) 369, 416, 448, 481, 597, 841, 1037, 1415, 1657
AjiI CACGTC 2 cut(s) 1258, 1309
AjnI CCWGG 1 cut(s) 1325
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
Alw21I GWGCWC 2 cut(s) 821, 1744
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 568, 671
AlwNI CAGNNNCTG 2 cut(s) 317, 1326
Aor13HI TCCGGA 1 cut(s) 1096
AoxI GGCC 8 cut(s) 870, 1041, 1207, 1221, 1276, 1389, 1606, 1618
ApeKI GCWGC 3 cut(s) 503, 773, 1067
ApoI RAATTY 5 cut(s) 102, 857, 972, 1118, 1394
ArsI GACNNNNNNTTYG 2 cut(s) 1740, 1772
AseI ATTAAT 2 cut(s) 498, 720
AsiGI ACCGGT 1 cut(s) 1019
AspLEI GCGC 3 cut(s) 1128, 1448, 1663
AspS9I GGNCC 6 cut(s) 1099, 1208, 1222, 1296, 1508, 1619
AsuHPI GGTGA 6 cut(s) 482, 590, 659, 1079, 1532, 1750
AvaII GGWCC 3 cut(s) 1099, 1296, 1508
BaeGI GKGCMC 1 cut(s) 1729
BalI TGGCCA 1 cut(s) 1608
BanI GGYRCC 1 cut(s) 1461
BanII GRGCYC 2 cut(s) 821, 1744
BbsI GAAGAC 2 cut(s) 84, 282
Bbv12I GWGCWC 2 cut(s) 821, 1744
BbvI GCAGC 3 cut(s) 490, 760, 1079
BccI CCATC 7 cut(s) 247, 454, 503, 653, 890, 1098, 1647
BciT130I CCWGG 1 cut(s) 1327
BciVI GTATCC 1 cut(s) 1483
BclI TGATCA 2 cut(s) 238, 1131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 822, 944
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 2 cut(s) 1129, 1664
BfrI CTTAAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 1483
BglII AGATCT 1 cut(s) 946
BisI GCNGC 4 cut(s) 504, 774, 1068, 1276
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 4 cut(s) 505, 775, 1069, 1277
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 1327
Bme18I GGWCC 3 cut(s) 1099, 1296, 1508
BmgBI CACGTC 2 cut(s) 1258, 1309
BmgT120I GGNCC 6 cut(s) 1099, 1208, 1222, 1296, 1508, 1619
BmiI GGNNCC 7 cut(s) 727, 956, 1009, 1297, 1298, 1463, 1621
BmrFI CCNGG 1 cut(s) 1327
BmsI GCATC 2 cut(s) 52, 752
BpiI GAAGAC 2 cut(s) 84, 282
BplI GAGNNNNNCTC 2 cut(s) 857, 889
Bpu1102I GCTNAGC 1 cut(s) 906
BsaJI CCNNGG 1 cut(s) 1198
BsaWI WCCGGW 2 cut(s) 1019, 1096
Bsc4I CCNNNNNNNGG 3 cut(s) 989, 1096, 1457
Bse118I RCCGGY 4 cut(s) 998, 1019, 1039, 1149
Bse1I ACTGG 2 cut(s) 649, 1082
Bse3DI GCAATG 1 cut(s) 1300
BseAI TCCGGA 1 cut(s) 1096
BseBI CCWGG 1 cut(s) 1327
BseDI CCNNGG 1 cut(s) 1198
BseGI GGATG 2 cut(s) 180, 1134
BseLI CCNNNNNNNGG 3 cut(s) 989, 1096, 1457
BseMI GCAATG 1 cut(s) 1300
BseMII CTCAG 5 cut(s) 207, 324, 429, 609, 897
BseNI ACTGG 2 cut(s) 649, 1082
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 1729
BseXI GCAGC 3 cut(s) 490, 760, 1079
Bsh1236I CGCG 2 cut(s) 1446, 1746
Bsh1285I CGRYCG 1 cut(s) 1348
BshFI GGCC 8 cut(s) 872, 1043, 1209, 1223, 1278, 1391, 1608, 1620
BshNI GGYRCC 1 cut(s) 1461
BshTI ACCGGT 1 cut(s) 1019
BsiEI CGRYCG 1 cut(s) 1348
BsiHKAI GWGCWC 2 cut(s) 821, 1744
BsiSI CCGG 7 cut(s) 999, 1020, 1040, 1097, 1150, 1363, 1388
BslFI GGGAC 2 cut(s) 1006, 1309
BslI CCNNNNNNNGG 3 cut(s) 989, 1096, 1457
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 1006, 1309
BsnI GGCC 8 cut(s) 872, 1043, 1209, 1223, 1278, 1391, 1608, 1620
Bsp1286I GDGCHC 3 cut(s) 821, 1729, 1744
Bsp13I TCCGGA 1 cut(s) 1096
Bsp143I GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
Bsp1720I GCTNAGC 1 cut(s) 906
Bsp68I TCGCGA 1 cut(s) 1746
BspACI CCGC 6 cut(s) 966, 1002, 1065, 1275, 1348, 1761
BspANI GGCC 8 cut(s) 872, 1043, 1209, 1223, 1278, 1391, 1608, 1620
BspCNI CTCAG 5 cut(s) 206, 323, 430, 610, 898
BspEI TCCGGA 1 cut(s) 1096
BspFNI CGCG 2 cut(s) 1446, 1746
BspLI GGNNCC 7 cut(s) 727, 956, 1009, 1297, 1298, 1463, 1621
BspPI GGATC 2 cut(s) 568, 671
BspT107I GGYRCC 1 cut(s) 1461
BspTI CTTAAG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 1300
BsrFI RCCGGY 4 cut(s) 998, 1019, 1039, 1149
BsrI ACTGG 2 cut(s) 649, 1082
BssAI RCCGGY 4 cut(s) 998, 1019, 1039, 1149
BssECI CCNNGG 1 cut(s) 1198
BssMI GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
BssT1I CCWWGG 1 cut(s) 1198
Bst2UI CCWGG 1 cut(s) 1327
Bst4CI ACNGT 5 cut(s) 144, 334, 424, 476, 715
Bst6I CTCTTC 1 cut(s) 1561
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 870, 1051, 1352, 1744
BstF5I GGATG 2 cut(s) 180, 1134
BstFNI CGCG 2 cut(s) 1446, 1746
BstH2I RGCGCY 2 cut(s) 1129, 1664
BstHHI GCGC 3 cut(s) 1128, 1448, 1663
BstKTI GATC 9 cut(s) 241, 386, 399, 563, 679, 698, 949, 1134, 1341
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
BstMCI CGRYCG 1 cut(s) 1348
BstMWI GCNNNNNNNGC 7 cut(s) 1236, 1260, 1284, 1311, 1320, 1769, 1790
BstNI CCWGG 1 cut(s) 1327
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 1325
BstSFI CTRYAG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 1729
BstUI CGCG 2 cut(s) 1446, 1746
BstV1I GCAGC 3 cut(s) 490, 760, 1079
BstV2I GAAGAC 2 cut(s) 84, 282
BstX2I RGATCY 3 cut(s) 560, 676, 946
BstXI CCANNNNNNTGG 1 cut(s) 1616
BstYI RGATCY 3 cut(s) 560, 676, 946
BsuI GTATCC 1 cut(s) 1483
BsuRI GGCC 8 cut(s) 872, 1043, 1209, 1223, 1278, 1391, 1608, 1620
BtrI CACGTC 2 cut(s) 1258, 1309
BtsCI GGATG 2 cut(s) 180, 1134
BtsI GCAGTG 2 cut(s) 738, 1044
BtsIMutI CAGTG 4 cut(s) 738, 891, 1044, 1211
BtuMI TCGCGA 1 cut(s) 1746
Cac8I GCNNGC 4 cut(s) 870, 1051, 1352, 1744
CaiI CAGNNNCTG 2 cut(s) 317, 1326
CfoI GCGC 3 cut(s) 1128, 1448, 1663
Cfr10I RCCGGY 4 cut(s) 998, 1019, 1039, 1149
Cfr13I GGNCC 6 cut(s) 1099, 1208, 1222, 1296, 1508, 1619
Csp6I GTAC 2 cut(s) 211, 927
CspAI ACCGGT 1 cut(s) 1019
CviAII CATG 5 cut(s) 299, 467, 489, 959, 1610
CviQI GTAC 2 cut(s) 211, 927
DpnI GATC 9 cut(s) 240, 385, 398, 562, 678, 697, 948, 1133, 1340
DpnII GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
DraIII CACNNNGTG 2 cut(s) 470, 1801
DrdI GACNNNNNNGTC 2 cut(s) 284, 1506
DseDI GACNNNNNNGTC 2 cut(s) 284, 1506
EaeI YGGCCR 4 cut(s) 1041, 1276, 1389, 1606
Eam1104I CTCTTC 1 cut(s) 1561
EarI CTCTTC 1 cut(s) 1561
Ecl136II GAGCTC 2 cut(s) 819, 1742
Eco130I CCWWGG 1 cut(s) 1198
Eco147I AGGCCT 1 cut(s) 872
Eco24I GRGCYC 2 cut(s) 821, 1744
Eco47I GGWCC 3 cut(s) 1099, 1296, 1508
Eco53kI GAGCTC 2 cut(s) 819, 1742
Eco57I CTGAAG 2 cut(s) 423, 606
EcoICRI GAGCTC 2 cut(s) 819, 1742
EcoO109I RGGNCCY 1 cut(s) 1296
EcoRII CCWGG 1 cut(s) 1325
EcoT14I CCWWGG 1 cut(s) 1198
EcoT38I GRGCYC 2 cut(s) 821, 1744
ErhI CCWWGG 1 cut(s) 1198
FaeI CATG 5 cut(s) 302, 470, 492, 962, 1613
FalI AAGNNNNNCTT 4 cut(s) 76, 108, 894, 926
FaqI GGGAC 2 cut(s) 1006, 1309
FatI CATG 5 cut(s) 298, 466, 488, 958, 1609
FauI CCCGC 1 cut(s) 1072
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 2 cut(s) 238, 1131
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 504, 774, 1068, 1276
FokI GGATG 2 cut(s) 167, 1121
FriOI GRGCYC 2 cut(s) 821, 1744
Fsp4HI GCNGC 4 cut(s) 504, 774, 1068, 1276
FspBI CTAG 2 cut(s) 822, 944
GlaI GCGC 3 cut(s) 1127, 1447, 1662
GluI GCNGC 4 cut(s) 504, 774, 1068, 1276
HaeII RGCGCY 2 cut(s) 1129, 1664
HaeIII GGCC 8 cut(s) 872, 1043, 1209, 1223, 1278, 1391, 1608, 1620
HapII CCGG 7 cut(s) 999, 1020, 1040, 1097, 1150, 1363, 1388
HhaI GCGC 3 cut(s) 1128, 1448, 1663
Hin1II CATG 5 cut(s) 302, 470, 492, 962, 1613
Hin6I GCGC 3 cut(s) 1126, 1446, 1661
HinP1I GCGC 3 cut(s) 1126, 1446, 1661
HincII GTYRAC 2 cut(s) 113, 1332
HindII GTYRAC 2 cut(s) 113, 1332
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 7 cut(s) 20, 157, 197, 222, 314, 342, 581
HpaII CCGG 7 cut(s) 999, 1020, 1040, 1097, 1150, 1363, 1388
HphI GGTGA 6 cut(s) 482, 590, 659, 1079, 1532, 1750
Hpy166II GTNNAC 4 cut(s) 113, 305, 1087, 1332
Hpy188I TCNGA 9 cut(s) 196, 313, 439, 565, 586, 709, 1402, 1428, 1717
Hpy8I GTNNAC 4 cut(s) 113, 305, 1087, 1332
HpyAV CCTTC 4 cut(s) 847, 983, 1153, 1526
HpyCH4III ACNGT 5 cut(s) 144, 334, 424, 476, 715
HpyCH4IV ACGT 3 cut(s) 1257, 1281, 1308
HpyCH4V TGCA 7 cut(s) 13, 743, 776, 790, 804, 850, 1049
HpyF10VI GCNNNNNNNGC 7 cut(s) 1236, 1260, 1284, 1311, 1320, 1769, 1790
HpySE526I ACGT 3 cut(s) 1257, 1281, 1308
Hsp92II CATG 5 cut(s) 302, 470, 492, 962, 1613
HspAI GCGC 3 cut(s) 1126, 1446, 1661
KflI GGGWCCC 1 cut(s) 1296
Kpn2I TCCGGA 1 cut(s) 1096
Ksp22I TGATCA 2 cut(s) 238, 1131
Kzo9I GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
LmnI GCTCC 4 cut(s) 362, 816, 1058, 1328
Lsp1109I GCAGC 3 cut(s) 490, 760, 1079
LweI GCATC 2 cut(s) 52, 752
MaeI CTAG 2 cut(s) 822, 944
MaeII ACGT 3 cut(s) 1257, 1281, 1308
MaeIII GTNAC 4 cut(s) 470, 491, 623, 1756
MalI GATC 9 cut(s) 240, 385, 398, 562, 678, 697, 948, 1133, 1340
MboI GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 3 cut(s) 560, 676, 946
MhlI GDGCHC 3 cut(s) 821, 1729, 1744
MlsI TGGCCA 1 cut(s) 1608
MluNI TGGCCA 1 cut(s) 1608
MlyI GAGTC 3 cut(s) 191, 231, 323
MmeI TCCRAC 3 cut(s) 1004, 1162, 1425
Mox20I TGGCCA 1 cut(s) 1608
MroI TCCGGA 1 cut(s) 1096
MscI TGGCCA 1 cut(s) 1608
MseI TTAA 6 cut(s) 117, 215, 498, 720, 810, 1816
MslI CAYNNNNRTG 4 cut(s) 498, 645, 1614, 1644
Msp20I TGGCCA 1 cut(s) 1608
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 7 cut(s) 999, 1020, 1040, 1097, 1150, 1363, 1388
MspR9I CCNGG 1 cut(s) 1327
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 1327
MvnI CGCG 2 cut(s) 1446, 1746
MwoI GCNNNNNNNGC 7 cut(s) 1236, 1260, 1284, 1311, 1320, 1769, 1790
NdeI CATATG 1 cut(s) 769
NdeII GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
NlaIII CATG 5 cut(s) 302, 470, 492, 962, 1613
NlaIV GGNNCC 7 cut(s) 727, 956, 1009, 1297, 1298, 1463, 1621
NmuCI GTSAC 3 cut(s) 470, 491, 1756
NruI TCGCGA 1 cut(s) 1746
NspI RCATGY 1 cut(s) 492
PceI AGGCCT 1 cut(s) 872
PciI ACATGT 1 cut(s) 488
PfeI GAWTC 4 cut(s) 20, 157, 342, 581
PflFI GACNNNGTC 1 cut(s) 713
PinAI ACCGGT 1 cut(s) 1019
PkrI GCNGC 4 cut(s) 505, 775, 1069, 1277
PleI GAGTC 3 cut(s) 191, 230, 322
PpsI GAGTC 3 cut(s) 191, 230, 322
PpuMI RGGWCCY 1 cut(s) 1296
PscI ACATGT 1 cut(s) 488
PshBI ATTAAT 2 cut(s) 498, 720
Psp124BI GAGCTC 2 cut(s) 821, 1744
Psp5II RGGWCCY 1 cut(s) 1296
Psp6I CCWGG 1 cut(s) 1325
PspGI CCWGG 1 cut(s) 1325
PspN4I GGNNCC 7 cut(s) 727, 956, 1009, 1297, 1298, 1463, 1621
PspPI GGNCC 6 cut(s) 1099, 1208, 1222, 1296, 1508, 1619
PspPPI RGGWCCY 1 cut(s) 1296
PsrI GAACNNNNNNTAC 2 cut(s) 276, 308
PstNI CAGNNNCTG 2 cut(s) 317, 1326
PsuI RGATCY 3 cut(s) 560, 676, 946
PsyI GACNNNGTC 1 cut(s) 713
RruI TCGCGA 1 cut(s) 1746
RsaI GTAC 2 cut(s) 212, 928
RsaNI GTAC 2 cut(s) 211, 927
RseI CAYNNNNRTG 4 cut(s) 498, 645, 1614, 1644
SacI GAGCTC 2 cut(s) 821, 1744
SalI GTCGAC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 117, 215, 498, 720, 810, 1816
SatI GCNGC 4 cut(s) 504, 774, 1068, 1276
Sau3AI GATC 9 cut(s) 238, 383, 396, 560, 676, 695, 946, 1131, 1338
Sau96I GGNCC 6 cut(s) 1099, 1208, 1222, 1296, 1508, 1619
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 3 cut(s) 191, 231, 323
ScrFI CCNGG 1 cut(s) 1327
SduI GDGCHC 3 cut(s) 821, 1729, 1744
SfaNI GCATC 2 cut(s) 52, 752
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 3 cut(s) 1099, 1296, 1508
SmiMI CAYNNNNRTG 4 cut(s) 498, 645, 1614, 1644
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 6 cut(s) 966, 1002, 1065, 1275, 1348, 1761
SspI AATATT 1 cut(s) 1075
SspMI CTAG 2 cut(s) 822, 944
SstI GAGCTC 2 cut(s) 821, 1744
StuI AGGCCT 1 cut(s) 872
StyD4I CCNGG 1 cut(s) 1325
StyI CCWWGG 1 cut(s) 1198
TaaI ACNGT 5 cut(s) 144, 334, 424, 476, 715
TaiI ACGT 3 cut(s) 1260, 1284, 1311
TaqI TCGA 4 cut(s) 35, 112, 220, 1702
TaqII GACCGA 1 cut(s) 1306
TatI WGTACW 2 cut(s) 210, 926
TauI GCSGC 1 cut(s) 1278
TfiI GAWTC 4 cut(s) 20, 157, 342, 581
Tru1I TTAA 6 cut(s) 117, 215, 498, 720, 810, 1816
Tru9I TTAA 6 cut(s) 117, 215, 498, 720, 810, 1816
TscAI CASTG 4 cut(s) 745, 898, 1051, 1218
TseFI GTSAC 3 cut(s) 470, 491, 1756
TseI GCWGC 3 cut(s) 503, 773, 1067
Tsp45I GTSAC 3 cut(s) 470, 491, 1756
TspDTI ATGAA 5 cut(s) 17, 170, 287, 288, 468
TspRI CASTG 4 cut(s) 745, 898, 1051, 1218
Tth111I GACNNNGTC 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 3 cut(s) 1099, 1296, 1508
VspI ATTAAT 2 cut(s) 498, 720
XapI RAATTY 5 cut(s) 102, 857, 972, 1118, 1394
XbaI TCTAGA 2 cut(s) 821, 943
XceI RCATGY 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 2 cut(s) 822, 944
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.