Rmu_co8436805.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436805.1
OG0001112
Physical Location & Seq
Forward (+)
1067 .. 1549
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436805.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atggcaactggcaatgtttgcagcattcagaattataacaatgatactggtctcgaggaggttgaagttggtgaaggaaaagaagaacagacttgtttagctcaagaaactcaaaagacttcaaggcatgaaagagatcttcacatgcatagtgatttagaaaatgtatgcgctaagaaggtagaggtttccgggagctgcttagaggtaatagatatggcatgtgacactgaagatggagagttgagggaatcagatgtgccttattgggaggagaatgattttgaagaaattgaacatgttgattatggttctgatacatatgacactaatgctgctaatggaaaaatggaatgtagagaaactgaattttgtgggatagaatctaggaacattaacatcaacgtgcaggttgggcgaggattaagcctaggttacgatattatgtgtggaaaagttgaacattgtgcaattggaaatgct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

4.27

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 5 cut(s) 65, 123, 287, 296, 461
AluBI AGCT 2 cut(s) 101, 198
AluI AGCT 2 cut(s) 101, 198
Alw26I GTCTC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 21, 198, 335
ApoI RAATTY 1 cut(s) 368
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 430
BbvI GCAGC 3 cut(s) 33, 185, 322
BccI CCATC 1 cut(s) 230
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 387, 431
BfuAI ACCTGC 1 cut(s) 400
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 22, 199, 336
BlnI CCTAGG 1 cut(s) 430
BlsI GCNGC 3 cut(s) 23, 200, 337
Bme1390I CCNGG 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 13, 52
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 13, 52
BseRI GAGGAG 2 cut(s) 71, 287
BseXI GCAGC 3 cut(s) 33, 185, 322
BsgI GTGCAG 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 53
Bsp143I GATC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 13, 52
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 174, 202
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 18, 415
BstNSI RCATGY 3 cut(s) 148, 225, 302
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 33, 185, 322
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 173
CviAII CATG 4 cut(s) 128, 145, 222, 299
CviJI RGCY 3 cut(s) 101, 198, 429
CviKI_1 RGCY 3 cut(s) 101, 198, 429
DdeI CTNAG 2 cut(s) 174, 202
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 4 cut(s) 131, 148, 225, 302
FatI CATG 4 cut(s) 127, 144, 221, 298
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 22, 199, 336
Fsp4HI GCNGC 3 cut(s) 22, 199, 336
FspBI CTAG 2 cut(s) 387, 431
GlaI GCGC 1 cut(s) 172
GluI GCNGC 3 cut(s) 22, 199, 336
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 173
Hin1II CATG 4 cut(s) 131, 148, 225, 302
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 251, 383
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 30, 256, 316
Hpy188III TCNNGA 2 cut(s) 53, 104
HpyAV CCTTC 2 cut(s) 68, 172
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 21, 148, 409, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 415
HpyF3I CTNAG 2 cut(s) 174, 202
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 4 cut(s) 131, 148, 225, 302
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 33, 205, 395
Lsp1109I GCAGC 3 cut(s) 33, 185, 322
MaeI CTAG 2 cut(s) 387, 431
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 224, 434
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 4 cut(s) 95, 131, 245, 299
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 136
MluCI AATT 4 cut(s) 31, 291, 368, 471
MnlI CCTC 7 cut(s) 49, 52, 178, 199, 240, 265, 413
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 2 cut(s) 396, 425
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 18, 415
NciI CCSGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 131, 148, 225, 302
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 3 cut(s) 148, 225, 302
PaeR7I CTCGAG 1 cut(s) 53
PciI ACATGT 1 cut(s) 298
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 251, 383
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 3 cut(s) 23, 200, 337
PscI ACATGT 1 cut(s) 298
PsiI TTATAA 1 cut(s) 36
PsuI RGATCY 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 2 cut(s) 396, 425
SatI GCNGC 3 cut(s) 22, 199, 336
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 193
SetI ASST 9 cut(s) 63, 103, 183, 189, 200, 210, 408, 414, 436
Sfr274I CTCGAG 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 53, 102
SmoI CTYRAG 2 cut(s) 53, 102
Sse9I AATT 4 cut(s) 31, 291, 368, 471
SspMI CTAG 2 cut(s) 387, 431
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 430
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 31, 291, 368, 471
TfiI GAWTC 2 cut(s) 251, 383
Tru1I TTAA 2 cut(s) 396, 425
Tru9I TTAA 2 cut(s) 396, 425
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 21, 198, 335
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 368
XceI RCATGY 3 cut(s) 148, 225, 302
XhoI CTCGAG 1 cut(s) 53
XmaJI CCTAGG 1 cut(s) 430
XspI CTAG 2 cut(s) 387, 431
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.