RLG00000022088

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001112
Physical Location & Seq
Reverse (-)
80814934 .. 80816319
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022088

Sequence Viewer

Length: 651 bp
ATGGATGTTCAGAAGAAGCCTTGTGATATAGTGCAGCCTACGGTTTATAATGTGGAACAGGGATTGAAAGCATCACCTGACTCTAAAATAAGTGATGGTAGATGTGGTCCTGCTGATAATGCTCTAGGATCTTTAAAAGATGCAGTTGTGGAGGAGGTTTCCTGTGGGATTGGCAGCACTGTTGTAGATAATAATGGTAAAGGCCCTGGTGCAACGTCCAACTTCCTTGATGATCTAAAATATCCTGAAGAGATGTCAGGTGGTGAGAGCTGTCACTTACAGAAGTGTTGTCCTGAGGTCAAGCCTGTAGGCAAAACAGAAGATGTGATTAAGGCTACACCAGGTGCCTCTGTTGGTGAAAGCCTCTCTTTGGCAACTGTAATTGCAAAGGATCAGCGACGATGGCAGAGATTACATCCCGAGACCCGCGGCGATAGGGAGAGAGATCCTGGTGCTGGCGATGGCCTCAAGAGTACTGTTGTCAATGACAAGCTAAATCGAAAAGTATTTAGATCTCAAAGTGAACGCAATGCGACGATATATATATGGCGGCGATTACATCCTGAAACCAGCTGCGATATCATAGTGAGAGAGATCCTGATCGGGATGATGGTAGCATCTCAAGAGTATTGGCATCGATGGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.77

Weight (kDa)

5.88

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 1 cut(s) 429
AciI CCGC 3 cut(s) 427, 429, 550
AclWI GGATC 4 cut(s) 136, 399, 440, 589
AcuI CTGAAG 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 370, 455
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 3 cut(s) 205, 340, 448
AluBI AGCT 3 cut(s) 270, 493, 573
AluI AGCT 3 cut(s) 270, 493, 573
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 4 cut(s) 136, 399, 440, 589
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 202, 463
ApeKI GCWGC 3 cut(s) 34, 174, 573
AspS9I GGNCC 2 cut(s) 107, 203
AsuHPI GGTGA 3 cut(s) 66, 275, 368
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 294
BanI GGYRCC 1 cut(s) 344
BbvI GCAGC 3 cut(s) 46, 186, 560
BccI CCATC 5 cut(s) 89, 396, 455, 604, 633
BciT130I CCWGG 3 cut(s) 207, 342, 450
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 306
BglII AGATCT 1 cut(s) 512
BisI GCNGC 5 cut(s) 35, 175, 430, 551, 574
BlsI GCNGC 5 cut(s) 36, 176, 431, 552, 575
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 3 cut(s) 207, 342, 450
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 107, 203
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 3 cut(s) 207, 342, 450
BmsI GCATC 4 cut(s) 80, 130, 626, 643
BpuEI CTTGAG 2 cut(s) 452, 606
Bsa29I ATCGAT 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 599
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 205, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 455
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 3 cut(s) 207, 342, 450
BseCI ATCGAT 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 205, 427
BseGI GGATG 4 cut(s) 10, 415, 559, 612
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 370, 455
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 46, 186, 560
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 204, 465
BshNI GGYRCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 637
BsiHKCI CYCGRG 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 370, 455
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 204, 465
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 419
Bsp143I GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
BspACI CCGC 3 cut(s) 427, 429, 550
BspANI GGCC 2 cut(s) 204, 465
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 637
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 4 cut(s) 136, 399, 440, 589
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 205, 427
BssMI GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
Bst2UI CCWGG 3 cut(s) 207, 342, 450
Bst4CI ACNGT 4 cut(s) 43, 181, 379, 478
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 4 cut(s) 10, 415, 559, 612
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 7 cut(s) 131, 235, 394, 448, 515, 597, 603
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
BstMWI GCNNNNNNNGC 3 cut(s) 119, 403, 640
BstNI CCWGG 3 cut(s) 207, 342, 450
BstSCI CCNGG 3 cut(s) 205, 340, 448
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 46, 186, 560
BstX2I RGATCY 4 cut(s) 128, 445, 512, 594
BstYI RGATCY 4 cut(s) 128, 445, 512, 594
Bsu15I ATCGAT 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 2 cut(s) 204, 465
BsuTUI ATCGAT 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 4 cut(s) 10, 415, 559, 612
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 107, 203
Cfr42I CCGCGG 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 637
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 1 cut(s) 474
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 1 cut(s) 294
DpnI GATC 7 cut(s) 130, 234, 393, 447, 514, 596, 602
DpnII GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
DraI TTTAAA 1 cut(s) 135
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 416
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 203
EcoRII CCWGG 3 cut(s) 205, 340, 448
EcoRV GATATC 1 cut(s) 580
FaiI YATR 7 cut(s) 29, 48, 541, 543, 545, 547, 584
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 5 cut(s) 35, 175, 430, 551, 574
FokI GGATG 4 cut(s) 17, 402, 546, 619
Fsp4HI GCNGC 5 cut(s) 35, 175, 430, 551, 574
FspBI CTAG 1 cut(s) 125
GluI GCNGC 5 cut(s) 35, 175, 430, 551, 574
HaeIII GGCC 2 cut(s) 204, 465
HinfI GANTC 1 cut(s) 80
HphI GGTGA 3 cut(s) 66, 275, 368
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 8 cut(s) 245, 293, 419, 469, 563, 598, 604, 623
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 2 cut(s) 402, 538
HpyCH4III ACNGT 4 cut(s) 43, 181, 379, 478
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 34, 143, 212, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 403, 640
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 215
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
Lsp1109I GCAGC 3 cut(s) 46, 186, 560
LweI GCATC 4 cut(s) 80, 130, 626, 643
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 272
MalI GATC 7 cut(s) 130, 234, 393, 447, 514, 596, 602
MboI GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
MboII GAAGA 3 cut(s) 25, 260, 332
MflI RGATCY 4 cut(s) 128, 445, 512, 594
MluCI AATT 1 cut(s) 381
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 145, 148, 289, 358, 374, 476
MseI TTAA 2 cut(s) 134, 330
MspA1I CMGCKG 2 cut(s) 429, 573
MspR9I CCNGG 3 cut(s) 207, 342, 450
MvaI CCWGG 3 cut(s) 207, 342, 450
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 119, 403, 640
NdeII GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 272
PkrI GCNGC 5 cut(s) 36, 176, 431, 552, 575
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PsiI TTATAA 1 cut(s) 48
Psp6I CCWGG 3 cut(s) 205, 340, 448
PspGI CCWGG 3 cut(s) 205, 340, 448
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 107, 203
PsuI RGATCY 4 cut(s) 128, 445, 512, 594
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SacII CCGCGG 1 cut(s) 430
SaqAI TTAA 2 cut(s) 134, 330
SatI GCNGC 5 cut(s) 35, 175, 430, 551, 574
Sau3AI GATC 7 cut(s) 128, 232, 391, 445, 512, 594, 600
Sau96I GGNCC 2 cut(s) 107, 203
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 3 cut(s) 207, 342, 450
SetI ASST 9 cut(s) 79, 159, 218, 262, 272, 300, 346, 495, 575
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 4 cut(s) 80, 130, 626, 643
SfcI CTRYAG 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 467, 621
SmoI CTYRAG 2 cut(s) 467, 621
Sse9I AATT 1 cut(s) 381
SsiI CCGC 3 cut(s) 427, 429, 550
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 3 cut(s) 205, 340, 448
TaaI ACNGT 4 cut(s) 43, 181, 379, 478
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 499, 637
TasI AATT 1 cut(s) 381
TatI WGTACW 1 cut(s) 473
TauI GCSGC 2 cut(s) 432, 553
Tru1I TTAA 2 cut(s) 134, 330
Tru9I TTAA 2 cut(s) 134, 330
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 34, 174, 573
Tsp45I GTSAC 1 cut(s) 272
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 107
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.