Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

64028481 .. 64031273

Gene Structure 2793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCCACAATAACAGTAGTAGCGCTTGTTAACAATCAACTCTCAAGTACCCTTCCAAGAAATATAGGCCTTGGACTTTCCAGCCTACGAGAGCTCTATCCATCGAAAAATAATTTGAGCGAAGTAATCCCCAAATCTATTTCCAATGCTTCTCAACTTACAGACCTGTATGTCGATGGATCATTCCCTTGTCCTTCAGAACACGTGATTATGGAAGAAAATTGGGTTGCATCTGATATAGAAAAGGAGTATATGAATTGGGTGCAAAATGATTCTGCCATTATGTTGATACTTGCTTCTACTCTATCCAGTGATGCTCTCTGCTTCATTATTGGAAGGACGTATGCACTACTTGGAAAAGCTTCTTTTCTTGGAAGTTCAATGCGAATGATGGTATCTCTATGTGTTATTATGGTTGAAATAAATAATCTGAAATTTTTGCCTCTCATCATGCTACTTCCTCTTATTTCAAAGGCTATTGGTAATGCTTTCAATGAAGGCTTGTATGAAGGCTTCCATGTGATTGATCATTCTAGAAATGGAGAAACACTTGTCCTTGGACTATTATTTCTTAGTCACTTGTTGGTACTTCTGCAGAACTTCAAGTTAGTGGACTGGCCTATCGACATTGTTTTGACTGCTGCACTCTCATATCTCAAGTATCTGAATTTGTCTTTCAACAATCTTCAAGGGGAAGTTCCAAATAGCGGGCCTTTCAAAAACTTGTCCGTTCAATCCTTTGTTTCAAACCATGGACTCTGTGGTGCATCCCAATTTCATGTTCCACCGTGCGAAAGGAAAACTAGCAGATCTATCTTAAAATATGTCCTTACAGCGATCTTGTCAACAATGCTGCTTGTGGCCATCATACTTTGGATGGTGATGTTACAGAGAAAGAAGAATATGGAAGCTCCAACGGAGACTACCTTCTTGGTTCAACTTGAACGGAGAAGAGTTTCATACAATGAACTTGTAAGTGCGACAAATGGATTCAACGAAAGTGTCTTACTTGGCACTAGGGGTTTTGGCTCCGTATATAAAGGAACACTGTCAGATGGGATAGATGTTGCCATAAAGGTTTACGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

40.2

Weight (kDa)

6.32

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	434, 667
AcuI	CTGAAG	1 cut(s)	180
AcvI	CACGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	49, 588
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	3 cut(s)	94, 362, 911
AluI	AGCT	3 cut(s)	94, 362, 911
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	4 cut(s)	67, 617, 710, 861
ApeKI	GCWGC	2 cut(s)	641, 853
ApoI	RAATTY	2 cut(s)	434, 667
Asp700I	GAANNNNTTC	2 cut(s)	361, 955
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	497, 529
BbrPI	CACGTG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	628, 840
BccI	CCATC	6 cut(s)	109, 170, 385, 871, 872, 1049
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	3 cut(s)	534, 804, 1017
BfmI	CTRYAG	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	26
BglII	AGATCT	1 cut(s)	809
BisI	GCNGC	2 cut(s)	642, 854
BlsI	GCNGC	2 cut(s)	643, 855
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	1030
BmsI	GCATC	3 cut(s)	239, 304, 776
BpuEI	CTTGAG	2 cut(s)	28, 641
BsaAI	YACGTR	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	70, 556, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	309, 620
BseDI	CCNNGG	3 cut(s)	70, 556, 751
BseGI	GGATG	2 cut(s)	767, 882
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseNI	ACTGG	2 cut(s)	309, 620
BseXI	GCAGC	2 cut(s)	628, 840
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	69, 619, 712, 863
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	914
BsnI	GGCC	4 cut(s)	69, 619, 712, 863
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	179, 526, 809, 837
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	4 cut(s)	69, 619, 712, 863
BspLI	GGNNCC	1 cut(s)	1030
BspMAI	CTGCAG	1 cut(s)	597
BspPI	GGATC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	309, 620
BssECI	CCNNGG	3 cut(s)	70, 556, 751
BssMI	GATC	4 cut(s)	179, 526, 809, 837
BssT1I	CCWWGG	3 cut(s)	70, 556, 751
Bst4CI	ACNGT	3 cut(s)	16, 789, 1050
Bst6I	CTCTTC	1 cut(s)	946
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	767, 882
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	182, 529, 812, 840
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	4 cut(s)	179, 526, 809, 837
BstSFI	CTRYAG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	628, 840
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	4 cut(s)	69, 619, 712, 863
BtgI	CCRYGG	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	767, 882
BtsIMutI	CAGTG	2 cut(s)	316, 1046
Cac8I	GCNNGC	1 cut(s)	710
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	710
Csp6I	GTAC	2 cut(s)	48, 587
CviAII	CATG	4 cut(s)	451, 518, 752, 779
CviQI	GTAC	2 cut(s)	48, 587
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	4 cut(s)	181, 528, 811, 839
DpnII	GATC	4 cut(s)	179, 526, 809, 837
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	1 cut(s)	946
EarI	CTCTTC	1 cut(s)	946
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	70, 556, 751
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	70, 556, 751
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	3 cut(s)	70, 556, 751
FaeI	CATG	4 cut(s)	454, 521, 755, 782
FatI	CATG	4 cut(s)	450, 517, 751, 778
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	642, 854
FokI	GGATG	2 cut(s)	754, 889
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	642, 854
FspBI	CTAG	3 cut(s)	534, 804, 1017
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	642, 854
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	69, 619, 712, 863
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	454, 521, 755, 782
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	2 cut(s)	31, 846
HindII	GTYRAC	2 cut(s)	31, 846
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	3 cut(s)	272, 756, 990
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	892
Hpy166II	GTNNAC	5 cut(s)	6, 31, 613, 846, 1081
Hpy188I	TCNGA	5 cut(s)	199, 235, 432, 666, 1054
Hpy188III	TCNNGA	1 cut(s)	534
Hpy8I	GTNNAC	5 cut(s)	6, 31, 613, 846, 1081
HpyAV	CCTTC	6 cut(s)	62, 204, 330, 491, 503, 937
HpyCH4III	ACNGT	3 cut(s)	16, 789, 1050
HpyCH4IV	ACGT	2 cut(s)	204, 341
HpyCH4V	TGCA	6 cut(s)	230, 265, 347, 595, 644, 767
HpyF3I	CTNAG	1 cut(s)	572
HpySE526I	ACGT	2 cut(s)	204, 341
Hsp92II	CATG	4 cut(s)	454, 521, 755, 782
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	179, 526, 809, 837
LmnI	GCTCC	2 cut(s)	916, 1034
LpnPI	CCDG	4 cut(s)	94, 179, 322, 601
Lsp1109I	GCAGC	2 cut(s)	628, 840
LweI	GCATC	3 cut(s)	239, 304, 776
MaeI	CTAG	3 cut(s)	534, 804, 1017
MaeII	ACGT	2 cut(s)	204, 341
MaeIII	GTNAC	2 cut(s)	575, 885
MalI	GATC	4 cut(s)	181, 528, 811, 839
MboI	GATC	4 cut(s)	179, 526, 809, 837
MboII	GAAGA	4 cut(s)	227, 677, 910, 963
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	6 cut(s)	112, 220, 256, 434, 667, 773
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	1 cut(s)	750
MmeI	TCCRAC	1 cut(s)	938
MnlI	CCTC	2 cut(s)	453, 471
Mox20I	TGGCCA	1 cut(s)	863
MroXI	GAANNNNTTC	2 cut(s)	361, 955
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	2 cut(s)	30, 818
Msp20I	TGGCCA	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	4 cut(s)	179, 526, 809, 837
NlaIII	CATG	4 cut(s)	454, 521, 755, 782
NlaIV	GGNNCC	1 cut(s)	1030
NmuCI	GTSAC	1 cut(s)	575
PceI	AGGCCT	1 cut(s)	69
PdmI	GAANNNNTTC	2 cut(s)	361, 955
PfeI	GAWTC	2 cut(s)	272, 990
PkrI	GCNGC	2 cut(s)	643, 855
PleI	GAGTC	1 cut(s)	750
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	750
Ppu21I	YACGTR	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	1030
PspPI	GGNCC	1 cut(s)	710
PstI	CTGCAG	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	2 cut(s)	49, 588
RsaNI	GTAC	2 cut(s)	48, 587
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	30, 818
SatI	GCNGC	2 cut(s)	642, 854
Sau3AI	GATC	4 cut(s)	179, 526, 809, 837
Sau96I	GGNCC	1 cut(s)	710
SchI	GAGTC	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	96, 168, 207, 344, 364, 913, 929, 1080
SfaNI	GCATC	3 cut(s)	239, 304, 776
SfcI	CTRYAG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	43, 656
SmoI	CTYRAG	2 cut(s)	43, 656
Sse9I	AATT	6 cut(s)	112, 220, 256, 434, 667, 773
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	3 cut(s)	534, 804, 1017
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	69
StyI	CCWWGG	3 cut(s)	70, 556, 751
TaaI	ACNGT	3 cut(s)	16, 789, 1050
TaiI	ACGT	2 cut(s)	207, 344
TaqI	TCGA	3 cut(s)	104, 174, 624
TasI	AATT	6 cut(s)	112, 220, 256, 434, 667, 773
TfiI	GAWTC	2 cut(s)	272, 990
Tru1I	TTAA	2 cut(s)	30, 818
Tru9I	TTAA	2 cut(s)	30, 818
TscAI	CASTG	2 cut(s)	316, 1053
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	641, 853
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	7 cut(s)	269, 316, 510, 522, 767, 948, 981
TspGWI	ACGGA	4 cut(s)	718, 932, 961, 1021
TspRI	CASTG	2 cut(s)	316, 1053
XapI	RAATTY	2 cut(s)	434, 667
XbaI	TCTAGA	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	361, 955
XspI	CTAG	3 cut(s)	534, 804, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.