Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

48665590 .. 48665831

Gene Structure 242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAGGATCTGTTCCACTTGATTAGTTGGAATAATCACTCTAAGCAACATGTAAAGGACGTAAGCCATTTTGATGCAATAGTGAAAATGAGGCATCAGGTCAATCACTTTGTATCTACATTACAGCAATATGGGGAGTCACAGCTATCACATGTATCATGGTGCAGGTTTCTATACTCAAGCACAAGGTCAAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

66

Amino Acids

7.88

Weight (kDa)

9.43

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_C_terminal	PF04130	9 - 58	8.5e-06	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	15
AflIII	ACRYGT	2 cut(s)	49, 151
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	64, 103
BpuEI	CTTGAG	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	15
BssMI	GATC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	53, 155
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	156
CviAII	CATG	3 cut(s)	50, 152, 159
CviJI	RGCY	2 cut(s)	66, 145
CviKI_1	RGCY	2 cut(s)	66, 145
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
FaeI	CATG	3 cut(s)	53, 155, 162
FaiI	YATR	7 cut(s)	51, 132, 153, 160, 175, 197, 199
FatI	CATG	3 cut(s)	49, 151, 158
Hin1II	CATG	3 cut(s)	53, 155, 162
HinfI	GANTC	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	77, 165
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	53, 155, 162
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	2 cut(s)	83, 151
LweI	GCATC	2 cut(s)	64, 103
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	72
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	53, 155, 162
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	2 cut(s)	53, 155
PciI	ACATGT	2 cut(s)	49, 151
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	2 cut(s)	49, 151
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	146
SetI	ASST	5 cut(s)	63, 102, 147, 170, 191
SfaNI	GCATC	2 cut(s)	64, 103
SgeI	CNNG	7 cut(s)	31, 62, 110, 164, 171, 178, 192
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
TaiI	ACGT	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	53, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.