Rmu_co8451701.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8451701.1
Physical Location & Seq
Reverse (-)
2 .. 1713
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8451701.1_g000001.1.cds

Sequence Viewer

Length: 1602 bp
cgagtagaacttacaaattctattagtccagatttgagttggaaggtttctaagggttacagaagtgcaccaaggcgaaggaaacaggttgataaaggaccaaaattgggtgcggagccagcaaataaaagtactaaaagttcatctgaaacaactgtttctgaatcagagaagcttggagtggctgtacttggaagacggttcagcgacaaaattgaacatgtgccgattaagaaaagaagatttatggtccgttctccgtcaccaccccctcgcttatcttctcagttacctgaaaacaatcaaccaggtgtgggtgatctacgtgcttcaggtcagaagtcatgttctaaatcaattgccaaaaagcatacaacaaggagtgatacttcttcggtgactagttttactcatagtgctgttactgttaacgagagtttaactgagccggcaaatgaaaagcctggttatggggaggacttctctggtattgagatattggctgctgctgcctgcaacaacagcatacatgatgatataggtgaagaattatcacgagaagggacgaatgcatcaacctctgcgaggcccttggcgaaaactgttgcatccttttcatcaacgccaatgataactgattcagagatatcagaaggaagagatgcatcattggaaacaattcattattcgcctaaagatgtagtacatgaagataaaatagagaactcctttgttgaggatagcttggttaaaactaatactggtgacggagatgaccaagcagtagcatcttcaaaggatgttaggttgcactgggatctaaatgtttgtatggatgcttgggaggagccttgtgatacggtgatggttgatcctcaagcaaatgctgtagacgacatctgtattgacagacagagcgaaaagcagccagtttcacaagatggtgatgcacagggatccgtagaagctaagaatcctgaactgcttcctgtggttgatgatgtggaacagggattgaaagcatccccggactctgaaataagttatggtaaaagtggcctggctgataatgctctaggatcttcaaaagatgcaggtgtggttacagacaattgcaatcaggatgtcagcatggatgcatgtggtgataattcctcctgtgttcgctttgacaatattgcaggcacacctactgtgcctttagaaaagaatggaacaccacctgccagtattggtgcacaactgggtgacactaactgttcaggaaagatccagctcgaaaaccctgctataacttgtgtgcctgttgtggaaggggtttcttgtgagatgggcagcactgttgtagatgatgatggtaagggctctgctgcaacatccagcttccatgatgatccaaaatccccagaagagatgacagcggtcgagagctgtcacttacagaagagttgtccagaggtcaagcctgtatgcaaaacagaagatgtgattaagcctgcatcaggtgcatctgttggtgaaggcctctctttggtgactttaattgtaaaggatcaggttgaagctgcatctcagattcatactgttaattctctacaaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

534

Amino Acids

56.61

Weight (kDa)

4.77

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1085, 1231
Acc36I ACCTGC 2 cut(s) 1085, 1231
AccI GTMKAC 1 cut(s) 891
AciI CCGC 2 cut(s) 113, 1421
AclWI GGATC 8 cut(s) 825, 866, 951, 964, 1087, 1264, 1388, 1560
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 133, 189, 705
AfiI CCNNNNNNNGG 6 cut(s) 107, 314, 470, 585, 1502, 1531
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 5 cut(s) 218, 795, 1018, 1086, 1562
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 3 cut(s) 307, 463, 1059
AluBI AGCT 7 cut(s) 175, 744, 968, 1276, 1383, 1431, 1565
AluI AGCT 7 cut(s) 175, 744, 968, 1276, 1383, 1431, 1565
Alw21I GWGCWC 2 cut(s) 70, 1240
Alw44I GTGCAC 2 cut(s) 66, 1236
AlwI GGATC 8 cut(s) 825, 866, 951, 964, 1087, 1264, 1388, 1560
AoxI GGCC 3 cut(s) 587, 1057, 1522
ApaLI GTGCAC 2 cut(s) 66, 1236
ApeKI GCWGC 7 cut(s) 503, 506, 509, 925, 1335, 1370, 1565
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 2 cut(s) 678, 984
AspS9I GGNCC 3 cut(s) 98, 250, 588
AsuC2I CCSGG 1 cut(s) 1028
AvaII GGWCC 2 cut(s) 98, 250
BaeGI GKGCMC 2 cut(s) 70, 1240
BamHI GGATCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 1367
BauI CACGAG 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 2 cut(s) 70, 1240
BbvI GCAGC 7 cut(s) 490, 493, 496, 937, 1347, 1357, 1552
BccI CCATC 4 cut(s) 859, 935, 1324, 1349
BcgI CGANNNNNNTGC 2 cut(s) 1268, 1302
BciT130I CCWGG 3 cut(s) 309, 465, 1061
BcnI CCSGG 1 cut(s) 1028
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 402, 1076
BfmI CTRYAG 1 cut(s) 888
BfuAI ACCTGC 2 cut(s) 1085, 1231
BisI GCNGC 7 cut(s) 504, 507, 510, 926, 1336, 1371, 1566
BlsI GCNGC 7 cut(s) 505, 508, 511, 927, 1337, 1372, 1567
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 4 cut(s) 309, 465, 1028, 1061
Bme18I GGWCC 2 cut(s) 98, 250
BmgT120I GGNCC 3 cut(s) 98, 250, 588
BmiI GGNNCC 3 cut(s) 117, 849, 958
BmrFI CCNGG 4 cut(s) 309, 465, 1028, 1061
BmrI ACTGGG 2 cut(s) 823, 1253
BmuI ACTGGG 2 cut(s) 823, 1253
BoxI GACNNNNGTC 1 cut(s) 1421
BpiI GAAGAC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 71, 591, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 314, 470, 585, 1502, 1531
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 5 cut(s) 766, 818, 929, 1227, 1248
BseBI CCWGG 3 cut(s) 309, 465, 1061
BseDI CCNNGG 3 cut(s) 71, 591, 1026
BseGI GGATG 7 cut(s) 608, 805, 841, 1022, 1129, 1141, 1376
BseLI CCNNNNNNNGG 6 cut(s) 107, 314, 470, 585, 1502, 1531
BseMII CTCAG 3 cut(s) 299, 435, 1586
BseNI ACTGG 5 cut(s) 766, 818, 929, 1227, 1248
BseRI GAGGAG 1 cut(s) 860
BseSI GKGCMC 2 cut(s) 70, 1240
BseXI GCAGC 7 cut(s) 490, 493, 496, 937, 1347, 1357, 1552
Bsh1285I CGRYCG 1 cut(s) 1425
BshFI GGCC 3 cut(s) 589, 1059, 1524
BsiEI CGRYCG 1 cut(s) 1425
BsiHKAI GWGCWC 2 cut(s) 70, 1240
BsiSI CCGG 2 cut(s) 449, 1028
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 6 cut(s) 107, 314, 470, 585, 1502, 1531
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 3 cut(s) 589, 1059, 1524
Bsp1286I GDGCHC 3 cut(s) 70, 1240, 1367
Bsp143I GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
BspACI CCGC 2 cut(s) 113, 1421
BspANI GGCC 3 cut(s) 589, 1059, 1524
BspCNI CTCAG 3 cut(s) 298, 436, 1585
BspLI GGNNCC 3 cut(s) 117, 849, 958
BspMI ACCTGC 2 cut(s) 1085, 1231
BspPI GGATC 8 cut(s) 825, 866, 951, 964, 1087, 1264, 1388, 1560
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 5 cut(s) 766, 818, 929, 1227, 1248
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 71, 591, 1026
BssMI GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 71, 591
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 309, 465, 1061
Bst4CI ACNGT 9 cut(s) 157, 201, 427, 604, 862, 1195, 1259, 1342, 1585
Bst6I CTCTTC 3 cut(s) 652, 1404, 1439
BstAPI GCANNNNNTGC 1 cut(s) 1505
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 5 cut(s) 120, 450, 514, 1183, 1497
BstDEI CTNAG 5 cut(s) 51, 285, 444, 969, 1572
BstENI CCTNNNNNAGG 2 cut(s) 583, 1500
BstF5I GGATG 7 cut(s) 608, 805, 841, 1022, 1129, 1141, 1376
BstKTI GATC 8 cut(s) 322, 820, 874, 959, 1082, 1272, 1396, 1555
BstMBI GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
BstMCI CGRYCG 1 cut(s) 1425
BstMWI GCNNNNNNNGC 5 cut(s) 119, 509, 522, 1070, 1505
BstNI CCWGG 3 cut(s) 309, 465, 1061
BstNSI RCATGY 2 cut(s) 224, 1143
BstPAI GACNNNNGTC 1 cut(s) 1421
BstSCI CCNGG 4 cut(s) 307, 463, 1026, 1059
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 2 cut(s) 70, 1240
BstV1I GCAGC 7 cut(s) 490, 493, 496, 937, 1347, 1357, 1552
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 4 cut(s) 817, 956, 1079, 1269
BstYI RGATCY 4 cut(s) 817, 956, 1079, 1269
BsuRI GGCC 3 cut(s) 589, 1059, 1524
BtsCI GGATG 7 cut(s) 608, 805, 841, 1022, 1129, 1141, 1376
BtsIMutI CAGTG 2 cut(s) 811, 1338
BveI ACCTGC 2 cut(s) 1085, 1231
Cac8I GCNNGC 5 cut(s) 120, 450, 514, 1183, 1497
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 3 cut(s) 98, 250, 588
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 3 cut(s) 132, 188, 704
CviAII CATG 7 cut(s) 221, 345, 530, 707, 1132, 1140, 1388
CviQI GTAC 3 cut(s) 132, 188, 704
DdeI CTNAG 5 cut(s) 51, 285, 444, 969, 1572
DpnI GATC 8 cut(s) 321, 819, 873, 958, 1081, 1271, 1395, 1554
DpnII GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
Eam1104I CTCTTC 3 cut(s) 652, 1404, 1439
EarI CTCTTC 3 cut(s) 652, 1404, 1439
Eco130I CCWWGG 2 cut(s) 71, 591
Eco147I AGGCCT 1 cut(s) 1524
Eco24I GRGCYC 1 cut(s) 1367
Eco32I GATATC 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 98, 250
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 2 cut(s) 583, 1500
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 3 cut(s) 307, 463, 1059
EcoRV GATATC 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 71, 591
EcoT22I ATGCAT 3 cut(s) 574, 667, 1141
EcoT38I GRGCYC 1 cut(s) 1367
ErhI CCWWGG 2 cut(s) 71, 591
FaeI CATG 7 cut(s) 224, 348, 533, 710, 1135, 1143, 1391
FaqI GGGAC 1 cut(s) 577
FatI CATG 7 cut(s) 220, 344, 529, 706, 1131, 1139, 1387
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 7 cut(s) 504, 507, 510, 926, 1336, 1371, 1566
FokI GGATG 7 cut(s) 595, 812, 848, 1009, 1136, 1148, 1363
FriOI GRGCYC 1 cut(s) 1367
Fsp4HI GCNGC 7 cut(s) 504, 507, 510, 926, 1336, 1371, 1566
FspBI CTAG 2 cut(s) 402, 1076
GluI GCNGC 7 cut(s) 504, 507, 510, 926, 1336, 1371, 1566
HaeIII GGCC 3 cut(s) 589, 1059, 1524
HapII CCGG 2 cut(s) 449, 1028
Hin1II CATG 7 cut(s) 224, 348, 533, 710, 1135, 1143, 1391
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 5 cut(s) 164, 638, 973, 1031, 1576
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 2 cut(s) 449, 1028
Hpy166II GTNNAC 4 cut(s) 68, 430, 892, 1238
Hpy188I TCNGA 8 cut(s) 148, 163, 169, 339, 643, 652, 1036, 1575
Hpy188III TCNNGA 7 cut(s) 29, 555, 977, 1121, 1263, 1426, 1454
Hpy8I GTNNAC 4 cut(s) 68, 430, 892, 1238
HpyAV CCTTC 6 cut(s) 37, 72, 554, 647, 1307, 1514
HpyCH4III ACNGT 9 cut(s) 157, 201, 427, 604, 862, 1195, 1259, 1342, 1585
HpyCH4IV ACGT 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 509, 522, 1070, 1505
HpyF3I CTNAG 5 cut(s) 51, 285, 444, 969, 1572
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 7 cut(s) 224, 348, 533, 710, 1135, 1143, 1391
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
LmnI GCTCC 2 cut(s) 115, 847
Lsp1109I GCAGC 7 cut(s) 490, 493, 496, 937, 1347, 1357, 1552
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 402, 1076
MaeII ACGT 1 cut(s) 325
MalI GATC 8 cut(s) 321, 819, 873, 958, 1081, 1271, 1395, 1554
MboI GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
MfeI CAATTG 2 cut(s) 357, 1111
MflI RGATCY 4 cut(s) 817, 956, 1079, 1269
MhlI GDGCHC 3 cut(s) 70, 1240, 1367
MlyI GAGTC 1 cut(s) 1025
MmeI TCCRAC 1 cut(s) 20
Mph1103I ATGCAT 3 cut(s) 574, 667, 1141
MroNI GCCGGC 1 cut(s) 448
MroXI GAANNNNTTC 2 cut(s) 678, 984
MseI TTAA 7 cut(s) 231, 429, 440, 750, 1491, 1541, 1587
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 2 cut(s) 449, 1028
MspR9I CCNGG 4 cut(s) 309, 465, 1028, 1061
MunI CAATTG 2 cut(s) 357, 1111
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 3 cut(s) 309, 465, 1061
MwoI GCNNNNNNNGC 5 cut(s) 119, 509, 522, 1070, 1505
NaeI GCCGGC 1 cut(s) 450
NciI CCSGG 1 cut(s) 1028
NdeII GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
NgoMIV GCCGGC 1 cut(s) 448
NlaIII CATG 7 cut(s) 224, 348, 533, 710, 1135, 1143, 1391
NlaIV GGNNCC 3 cut(s) 117, 849, 958
NmuCI GTSAC 6 cut(s) 261, 397, 764, 1247, 1433, 1534
NsiI ATGCAT 3 cut(s) 574, 667, 1141
NspI RCATGY 2 cut(s) 224, 1143
PaqCI CACCTGC 2 cut(s) 1085, 1231
PceI AGGCCT 1 cut(s) 1524
PciI ACATGT 1 cut(s) 220
PctI GAATGC 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 450
PdmI GAANNNNTTC 2 cut(s) 678, 984
PfeI GAWTC 4 cut(s) 164, 638, 973, 1576
PkrI GCNGC 7 cut(s) 505, 508, 511, 927, 1337, 1372, 1567
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 1421
Psp6I CCWGG 3 cut(s) 307, 463, 1059
PspGI CCWGG 3 cut(s) 307, 463, 1059
PspN4I GGNNCC 3 cut(s) 117, 849, 958
PspPI GGNCC 3 cut(s) 98, 250, 588
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
PsuI RGATCY 4 cut(s) 817, 956, 1079, 1269
RsaI GTAC 3 cut(s) 133, 189, 705
RsaNI GTAC 3 cut(s) 132, 188, 704
SaqAI TTAA 7 cut(s) 231, 429, 440, 750, 1491, 1541, 1587
SatI GCNGC 7 cut(s) 504, 507, 510, 926, 1336, 1371, 1566
Sau3AI GATC 8 cut(s) 319, 817, 871, 956, 1079, 1269, 1393, 1552
Sau96I GGNCC 3 cut(s) 98, 250, 588
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 4 cut(s) 309, 465, 1028, 1061
SduI GDGCHC 3 cut(s) 70, 1240, 1367
SexAI ACCWGGT 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 2 cut(s) 98, 250
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
SpeI ACTAGT 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 1524
SsiI CCGC 2 cut(s) 113, 1421
SspI AATATT 1 cut(s) 1177
SspMI CTAG 2 cut(s) 402, 1076
StuI AGGCCT 1 cut(s) 1524
StyD4I CCNGG 4 cut(s) 307, 463, 1026, 1059
StyI CCWWGG 2 cut(s) 71, 591
TaaI ACNGT 9 cut(s) 157, 201, 427, 604, 862, 1195, 1259, 1342, 1585
TaiI ACGT 1 cut(s) 328
TaqI TCGA 2 cut(s) 1278, 1425
TatI WGTACW 3 cut(s) 131, 187, 703
TfiI GAWTC 4 cut(s) 164, 638, 973, 1576
Tru1I TTAA 7 cut(s) 231, 429, 440, 750, 1491, 1541, 1587
Tru9I TTAA 7 cut(s) 231, 429, 440, 750, 1491, 1541, 1587
TscAI CASTG 2 cut(s) 818, 1345
TseFI GTSAC 6 cut(s) 261, 397, 764, 1247, 1433, 1534
TseI GCWGC 7 cut(s) 503, 506, 509, 925, 1335, 1370, 1565
Tsp45I GTSAC 6 cut(s) 261, 397, 764, 1247, 1433, 1534
TspDTI ATGAA 6 cut(s) 132, 471, 606, 671, 723, 1568
TspGWI ACGGA 4 cut(s) 242, 249, 783, 949
TspRI CASTG 2 cut(s) 818, 1345
VneI GTGCAC 2 cut(s) 66, 1236
VpaK11BI GGWCC 2 cut(s) 98, 250
XagI CCTNNNNNAGG 2 cut(s) 583, 1500
XapI RAATTY 1 cut(s) 16
XceI RCATGY 2 cut(s) 224, 1143
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 891
XmnI GAANNNNTTC 2 cut(s) 678, 984
XspI CTAG 2 cut(s) 402, 1076
ZrmI AGTACT 1 cut(s) 133
Zsp2I ATGCAT 3 cut(s) 574, 667, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.