Rh1DG092500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001112
Physical Location & Seq
Forward (+)
17364146 .. 17364646
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG092500.1

Sequence Viewer

Length: 501 bp
ATGCCTAATTGTGTCACTCAGTTCAGTGCATATAATGCCTCTCCTAGCAATGCAATATCTCAAATTGGGTGTGTACCTCCAATGACCACCAATACTGGATTTATGAATACATATGGTATGACTCCTTTTAATGTTTGTATGGATGTTTGGAAGGTACCTTGTGATATAGTCCAGCCTACGGTTTATAATGTGGAACAGGGATTGAAAGCATCTCCCAACTCTAAAATAAGTGATGGTAAATGTGGTCCTGCTGATAATGCTCTAGGATCTTTAAAAGATGCAGTTGTGGAGGGGGTTTCTTGTGAGATTGGCAGCACTGTTGTAGATAATAATGGTAAGGGCCCTGGTGCAACGTCCAGCTTCCATGATGATCCAAAATCTCCTAAAGAGATGTCAGGTGGCGAGAGCTGTCACTTACAGAAGTGTTGCCCTGAGGTCAAGCCTGTAGGAAAAACAGAAGAAGTGATTAAGGCTGCATGCACCAGGTGCCTCTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.49

Weight (kDa)

5.32

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 2 cut(s) 154, 486
AclWI GGATC 2 cut(s) 274, 365
AdeI CACNNNGTG 1 cut(s) 486
AfaI GTAC 2 cut(s) 75, 156
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 2 cut(s) 343, 482
AluBI AGCT 2 cut(s) 360, 408
AluI AGCT 2 cut(s) 360, 408
AlwI GGATC 2 cut(s) 274, 365
AoxI GGCC 1 cut(s) 340
ApaI GGGCCC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 312, 473
Asp718I GGTACC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 245, 340, 341
AvaII GGWCC 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 344
BanI GGYRCC 2 cut(s) 154, 486
BanII GRGCYC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 324, 460
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 345, 484
BfaI CTAG 2 cut(s) 45, 263
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 2 cut(s) 313, 474
BlsI GCNGC 2 cut(s) 314, 475
Bme1390I CCNGG 2 cut(s) 345, 484
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 245, 340, 341
BmiI GGNNCC 3 cut(s) 156, 342, 488
BmrFI CCNGG 2 cut(s) 345, 484
BmsI GCATC 2 cut(s) 218, 268
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 345, 484
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 32, 423
BseNI ACTGG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 2 cut(s) 324, 460
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 2 cut(s) 154, 486
BslI CCNNNNNNNGG 1 cut(s) 178
BsnI GGCC 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 266, 370
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 31, 424
BspLI GGNNCC 3 cut(s) 156, 342, 488
BspPI GGATC 2 cut(s) 274, 365
BspT107I GGYRCC 2 cut(s) 154, 486
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 266, 370
Bst2UI CCWGG 2 cut(s) 345, 484
Bst4CI ACNGT 2 cut(s) 181, 319
BstAPI GCANNNNNTGC 2 cut(s) 35, 486
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 18, 432
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 2 cut(s) 269, 373
BstMBI GATC 2 cut(s) 266, 370
BstMWI GCNNNNNNNGC 3 cut(s) 35, 257, 486
BstNI CCWGG 2 cut(s) 345, 484
BstNSI RCATGY 1 cut(s) 480
BstSCI CCNGG 2 cut(s) 343, 482
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 324, 460
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 31, 315
Cac8I GCNNGC 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 245, 340, 341
CsiI ACCWGGT 1 cut(s) 482
Csp6I GTAC 2 cut(s) 74, 155
CviAII CATG 2 cut(s) 365, 477
CviJI RGCY 6 cut(s) 175, 342, 360, 408, 442, 473
CviKI_1 RGCY 6 cut(s) 175, 342, 360, 408, 442, 473
CviQI GTAC 2 cut(s) 74, 155
DdeI CTNAG 2 cut(s) 18, 432
DpnI GATC 2 cut(s) 268, 372
DpnII GATC 2 cut(s) 266, 370
DraI TTTAAA 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 432
EcoO109I RGGNCCY 2 cut(s) 340, 341
EcoRII CCWGG 2 cut(s) 343, 482
EcoT38I GRGCYC 1 cut(s) 344
FaeI CATG 2 cut(s) 368, 480
FatI CATG 2 cut(s) 364, 476
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 313, 474
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 313, 474
FspBI CTAG 2 cut(s) 45, 263
GluI GCNGC 2 cut(s) 313, 474
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 2 cut(s) 368, 480
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 181, 319
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 6 cut(s) 29, 53, 281, 350, 476, 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 257, 486
HpyF3I CTNAG 2 cut(s) 18, 432
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 2 cut(s) 368, 480
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 266, 370
Lsp1109I GCAGC 2 cut(s) 324, 460
LweI GCATC 2 cut(s) 218, 268
MabI ACCWGGT 1 cut(s) 482
MaeI CTAG 2 cut(s) 45, 263
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 13, 410
MalI GATC 2 cut(s) 268, 372
MboI GATC 2 cut(s) 266, 370
MboII GAAGA 1 cut(s) 470
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 2 cut(s) 7, 63
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 5 cut(s) 49, 87, 283, 427, 500
MseI TTAA 3 cut(s) 129, 272, 468
MspR9I CCNGG 2 cut(s) 345, 484
MvaI CCWGG 2 cut(s) 345, 484
MwoI GCNNNNNNNGC 3 cut(s) 35, 257, 486
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 266, 370
NlaIII CATG 2 cut(s) 368, 480
NlaIV GGNNCC 3 cut(s) 156, 342, 488
NmuCI GTSAC 2 cut(s) 13, 410
NspI RCATGY 1 cut(s) 480
PaeI GCATGC 1 cut(s) 480
PkrI GCNGC 2 cut(s) 314, 475
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 343, 482
PspGI CCWGG 2 cut(s) 343, 482
PspN4I GGNNCC 3 cut(s) 156, 342, 488
PspOMI GGGCCC 1 cut(s) 340
PspPI GGNCC 3 cut(s) 245, 340, 341
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 2 cut(s) 75, 156
RsaNI GTAC 2 cut(s) 74, 155
SaqAI TTAA 3 cut(s) 129, 272, 468
SatI GCNGC 2 cut(s) 313, 474
Sau3AI GATC 2 cut(s) 266, 370
Sau96I GGNCC 3 cut(s) 245, 340, 341
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 345, 484
SduI GDGCHC 1 cut(s) 344
SetI ASST 9 cut(s) 79, 156, 160, 356, 362, 400, 410, 438, 488
SexAI ACCWGGT 1 cut(s) 482
SfaNI GCATC 2 cut(s) 218, 268
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 245
SphI GCATGC 1 cut(s) 480
Sse9I AATT 2 cut(s) 7, 63
SspMI CTAG 2 cut(s) 45, 263
StyD4I CCNGG 2 cut(s) 343, 482
TaaI ACNGT 2 cut(s) 181, 319
TaiI ACGT 1 cut(s) 356
TasI AATT 2 cut(s) 7, 63
Tru1I TTAA 3 cut(s) 129, 272, 468
Tru9I TTAA 3 cut(s) 129, 272, 468
TscAI CASTG 2 cut(s) 31, 322
TseFI GTSAC 2 cut(s) 13, 410
TseI GCWGC 2 cut(s) 312, 473
Tsp45I GTSAC 2 cut(s) 13, 410
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 2 cut(s) 31, 322
VpaK11BI GGWCC 1 cut(s) 245
XceI RCATGY 1 cut(s) 480
XspI CTAG 2 cut(s) 45, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.