Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001400.1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

66003 .. 66974

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001400.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgaaagaattacgatctcttttgttgatcgctgaagatgagattgaacaaactgtgaagtctatttctgggaggttcaggaatgaaatgatggcacatggtgatagtttcaaaaagacatgtgacattaatgctgctaatggctctgtattaggaaaagtggaatgtagagaaaatgaatcttgtggaatagaatctaggaagattaacatggacatgcaggttgtgcgaggattgagcccgggttttgataatatgtgtgaaaaagttgaacattgtgtgattgaaaatgttttaagacaatctttagtggggtcaaagaccagaacttctggatctaaacaattgcttggtgattctgaagcttcttcaaacagaactacagaagcaactgagggctgcacaataaggaagcatattggtgattgctttgatggtcgtaatggcaaagatcctatcaaagttgatagatcaatgacatctgacaccgtcaataatggaacctattatgccactgcatctattcctaaaaaggactctacatatgctgcaaacactattctgcaaaatgggaattgcattatgcaatctgtgtcaagcaatgatctcatgttcaaacaatgcacatctccaatatgtgatgacaattgccctggtggtagggactcaattgtagtaaatggagctctagacaatactacaccttcaagagtttgcactcaaagtttggagagcaggcctcaacttttgaactcaaagaaagaccaatctttttattgttccactgatggtaaagctgatcttgggaataatcaatgtactgctaatggttatctagatcttaggaaccatgttggtggtaaaattctttgtccagaagaagggacgtatgcactacttggaagagcttcttttcttggaagttcaatgcgaatgatatggtatctctatgtgttattatggttgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.46

Weight (kDa)

6.45

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	343, 446
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	54, 381
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	820
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	365, 686, 797, 908
AluI	AGCT	4 cut(s)	365, 686, 797, 908
Alw21I	GWGCWC	1 cut(s)	688
AlwI	GGATC	2 cut(s)	343, 446
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	3 cut(s)	134, 399, 548
ApoI	RAATTY	1 cut(s)	864
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	907
AsuC2I	CCSGG	2 cut(s)	242, 243
AsuHPI	GGTGA	3 cut(s)	113, 365, 434
AvaI	CYCGRG	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	242, 688
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	3 cut(s)	121, 386, 535
BccI	CCATC	3 cut(s)	85, 428, 782
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	2 cut(s)	242, 243
BfaI	CTAG	3 cut(s)	198, 689, 836
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	3 cut(s)	135, 400, 549
BlsI	GCNGC	3 cut(s)	136, 401, 550
Bme1390I	CCNGG	3 cut(s)	242, 243, 654
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	502, 848
BmrFI	CCNGG	3 cut(s)	242, 243, 654
BmsI	GCATC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpuMI	CCSGG	2 cut(s)	242, 243
BsaJI	CCNNGG	2 cut(s)	241, 652
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	241, 652
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	121, 386, 535
BsgI	GTGCAG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	739
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	677, 898
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	677, 898
BsnI	GGCC	1 cut(s)	739
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	242, 688
Bsp143I	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	502, 848
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	343, 446
BspQI	GCTCTTC	1 cut(s)	898
BsrDI	GCAATG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	241, 652
BssMI	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	2 cut(s)	55, 490
Bst6I	CTCTTC	1 cut(s)	898
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	737
BstDEI	CTNAG	2 cut(s)	393, 842
BstKTI	GATC	8 cut(s)	17, 30, 338, 454, 473, 607, 802, 841
BstMBI	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	2 cut(s)	123, 220
BstSCI	CCNGG	3 cut(s)	240, 241, 652
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	121, 386, 535
BstX2I	RGATCY	3 cut(s)	335, 451, 838
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	3 cut(s)	335, 451, 838
BsuRI	GGCC	1 cut(s)	739
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 783
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	737
Cfr9I	CCCGGG	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	819
CviAII	CATG	6 cut(s)	98, 120, 211, 217, 610, 851
CviJI	RGCY	8 cut(s)	144, 240, 365, 399, 686, 739, 797, 908
CviKI_1	RGCY	8 cut(s)	144, 240, 365, 399, 686, 739, 797, 908
CviQI	GTAC	1 cut(s)	819
DdeI	CTNAG	2 cut(s)	393, 842
DpnI	GATC	8 cut(s)	16, 29, 337, 453, 472, 606, 801, 840
DpnII	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
DraIII	CACNNNGTG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	898
EarI	CTCTTC	1 cut(s)	898
Ecl136II	GAGCTC	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	739
Eco24I	GRGCYC	2 cut(s)	242, 688
Eco53kI	GAGCTC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	54, 381
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	242, 688
FaeI	CATG	6 cut(s)	101, 123, 214, 220, 613, 854
FalI	AAGNNNNNCTT	6 cut(s)	289, 321, 786, 818, 895, 927
FaqI	GGGAC	2 cut(s)	677, 898
FatI	CATG	6 cut(s)	97, 119, 210, 216, 609, 850
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	135, 400, 549
FriOI	GRGCYC	2 cut(s)	242, 688
Fsp4HI	GCNGC	3 cut(s)	135, 400, 549
FspBI	CTAG	3 cut(s)	198, 689, 836
GluI	GCNGC	3 cut(s)	135, 400, 549
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	6 cut(s)	101, 123, 214, 220, 613, 854
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	5 cut(s)	179, 194, 356, 536, 665
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	113, 365, 434
Hpy188I	TCNGA	2 cut(s)	361, 484
Hpy188III	TCNNGA	6 cut(s)	79, 333, 689, 708, 836, 875
HpyAV	CCTTC	2 cut(s)	714, 875
HpyCH4III	ACNGT	2 cut(s)	55, 490
HpyCH4IV	ACGT	1 cut(s)	887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	393, 842
HpySE526I	ACGT	1 cut(s)	887
Hsp92II	CATG	6 cut(s)	101, 123, 214, 220, 613, 854
Kzo9I	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
LguI	GCTCTTC	1 cut(s)	898
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	3 cut(s)	121, 386, 535
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	3 cut(s)	198, 689, 836
MaeII	ACGT	1 cut(s)	887
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	8 cut(s)	16, 29, 337, 453, 472, 606, 801, 840
MboI	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
MboII	GAAGA	5 cut(s)	47, 214, 360, 890, 915
MfeI	CAATTG	3 cut(s)	344, 646, 669
MflI	RGATCY	3 cut(s)	335, 451, 838
MhlI	GDGCHC	2 cut(s)	242, 688
MluCI	AATT	6 cut(s)	8, 344, 574, 646, 669, 864
MlyI	GAGTC	2 cut(s)	530, 659
MnlI	CCTC	4 cut(s)	66, 224, 388, 750
MroXI	GAANNNNTTC	1 cut(s)	907
MseI	TTAA	3 cut(s)	129, 207, 296
MslI	CAYNNNNRTG	3 cut(s)	215, 420, 855
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	242, 243, 654
MunI	CAATTG	3 cut(s)	344, 646, 669
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	226
NciI	CCSGG	2 cut(s)	242, 243
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
NlaIII	CATG	6 cut(s)	101, 123, 214, 220, 613, 854
NlaIV	GGNNCC	2 cut(s)	502, 848
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	2 cut(s)	123, 220
PceI	AGGCCT	1 cut(s)	739
PciI	ACATGT	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	898
PdmI	GAANNNNTTC	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	179, 194, 356
PflFI	GACNNNGTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	136, 401, 550
PleI	GAGTC	2 cut(s)	530, 659
PpsI	GAGTC	2 cut(s)	530, 659
PscI	ACATGT	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	502, 848
PsuI	RGATCY	3 cut(s)	335, 451, 838
PsyI	GACNNNGTC	1 cut(s)	488
RsaI	GTAC	1 cut(s)	820
RsaNI	GTAC	1 cut(s)	819
RseI	CAYNNNNRTG	3 cut(s)	215, 420, 855
SacI	GAGCTC	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	898
SaqAI	TTAA	3 cut(s)	129, 207, 296
SatI	GCNGC	3 cut(s)	135, 400, 549
Sau3AI	GATC	8 cut(s)	14, 27, 335, 451, 470, 604, 799, 838
SchI	GAGTC	2 cut(s)	530, 659
ScrFI	CCNGG	3 cut(s)	242, 243, 654
SduI	GDGCHC	2 cut(s)	242, 688
SetI	ASST	9 cut(s)	77, 225, 367, 506, 688, 706, 799, 890, 910
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	381
SmaI	CCCGGG	1 cut(s)	243
SmiMI	CAYNNNNRTG	3 cut(s)	215, 420, 855
Sse9I	AATT	6 cut(s)	8, 344, 574, 646, 669, 864
SseBI	AGGCCT	1 cut(s)	739
SspMI	CTAG	3 cut(s)	198, 689, 836
SstI	GAGCTC	1 cut(s)	688
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	3 cut(s)	240, 241, 652
TaaI	ACNGT	2 cut(s)	55, 490
TaiI	ACGT	1 cut(s)	890
TasI	AATT	6 cut(s)	8, 344, 574, 646, 669, 864
TatI	WGTACW	1 cut(s)	818
TfiI	GAWTC	3 cut(s)	179, 194, 356
Tru1I	TTAA	3 cut(s)	129, 207, 296
Tru9I	TTAA	3 cut(s)	129, 207, 296
TscAI	CASTG	2 cut(s)	520, 790
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	134, 399, 548
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	17, 99, 192
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	2 cut(s)	520, 790
Tth111I	GACNNNGTC	1 cut(s)	488
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	864
XbaI	TCTAGA	2 cut(s)	688, 835
XceI	RCATGY	2 cut(s)	123, 220
XmaI	CCCGGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	907
XspI	CTAG	3 cut(s)	198, 689, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.