Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

27413883 .. 27414386

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATGCAAGGTACTCCGTATAATTGTTCTATTGCTACTGGGTCTTATTCAAATGCATATAATGGTTCTATCATGCCTAATTGTGTCACTCAGTTCAGTGCATATAATGTCGTTCCTAGCAATGCAATACCTCAAATAATGACCACCAATACTGGATTTATGAATACATATGGTATGACTCCTTTTAATGTTTGTATGGATGGTTGGAAGGAGCCTTGTGATATAGTGCAGCCAACGGTTTATAATGTGGAACAGGGATTGAAAGCATCACCTGACTCTAAAATAAGTGATGGTAGATGTGGTCCTGCTGATCATGCTCTAGGATCTTTAAAAGATGTAGTTGTGGAGGAGGTTTCCAGTGAGATTGGCAGCACTGTTGTAGATAATAATGGTAAAGGCCTTGTGCAACGTCTAGCTTCCTTGATGATCCAAAATATCCTGAAGAGATGTCAGGTGGTGAGAGCTGTCACTTACAGAAGTGTTATCCTGAGGTCAAGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.04

Weight (kDa)

6.54

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AclWI	GGATC	2 cut(s)	331, 421
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	51, 262
AluBI	AGCT	2 cut(s)	416, 464
AluI	AGCT	2 cut(s)	416, 464
AlwI	GGATC	2 cut(s)	331, 421
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	229, 369
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	261, 469
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	241, 381
BccI	CCATC	2 cut(s)	194, 284
BclI	TGATCA	1 cut(s)	310
BfaI	CTAG	3 cut(s)	117, 320, 413
BfmI	CTRYAG	1 cut(s)	500
BisI	GCNGC	2 cut(s)	230, 370
BlsI	GCNGC	2 cut(s)	231, 371
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	48
Bse1I	ACTGG	3 cut(s)	43, 157, 357
Bse21I	CCTNAGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	104, 479
BseNI	ACTGG	3 cut(s)	43, 157, 357
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	241, 381
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	310, 323, 426
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	103, 480
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	331, 421
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	3 cut(s)	43, 157, 357
BssMI	GATC	3 cut(s)	310, 323, 426
Bst4CI	ACNGT	2 cut(s)	238, 376
Bst6I	CTCTTC	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	90, 488
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	313, 326, 429
BstMBI	GATC	3 cut(s)	310, 323, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	241, 381
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	103, 364, 372
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	73, 314
CviJI	RGCY	6 cut(s)	214, 232, 399, 416, 464, 498
CviKI_1	RGCY	6 cut(s)	214, 232, 399, 416, 464, 498
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	90, 488
DpnI	GATC	3 cut(s)	312, 325, 428
DpnII	GATC	3 cut(s)	310, 323, 426
DraI	TTTAAA	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	58
FaeI	CATG	2 cut(s)	76, 317
FatI	CATG	2 cut(s)	72, 313
FauNDI	CATATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	230, 370
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	230, 370
FspBI	CTAG	3 cut(s)	117, 320, 413
GluI	GCNGC	2 cut(s)	230, 370
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	76, 317
HinfI	GANTC	2 cut(s)	178, 275
HphI	GGTGA	2 cut(s)	261, 469
Hpy188III	TCNNGA	2 cut(s)	439, 487
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	238, 376
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	6 cut(s)	7, 56, 101, 125, 229, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	90, 488
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	2 cut(s)	76, 317
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	310, 323, 426
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	9 cut(s)	24, 138, 239, 285, 318, 370, 437, 452, 500
Lsp1109I	GCAGC	2 cut(s)	241, 381
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	3 cut(s)	117, 320, 413
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	85, 466
MalI	GATC	3 cut(s)	312, 325, 428
MboI	GATC	3 cut(s)	310, 323, 426
MboII	GAAGA	1 cut(s)	454
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	2 cut(s)	22, 79
MlyI	GAGTC	2 cut(s)	172, 269
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	141, 340, 343, 483
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	2 cut(s)	186, 329
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	3 cut(s)	310, 323, 426
NlaIII	CATG	2 cut(s)	76, 317
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	85, 466
NsiI	ATGCAT	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	231, 371
PleI	GAGTC	2 cut(s)	172, 269
PpsI	GAGTC	2 cut(s)	172, 269
PsiI	TTATAA	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	186, 329
SatI	GCNGC	2 cut(s)	230, 370
Sau3AI	GATC	3 cut(s)	310, 323, 426
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	172, 269
SetI	ASST	9 cut(s)	13, 133, 274, 354, 412, 418, 456, 466, 494
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	22, 79
SseBI	AGGCCT	1 cut(s)	399
SspMI	CTAG	3 cut(s)	117, 320, 413
StuI	AGGCCT	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	238, 376
TaiI	ACGT	1 cut(s)	412
TasI	AATT	2 cut(s)	22, 79
Tru1I	TTAA	2 cut(s)	186, 329
Tru9I	TTAA	2 cut(s)	186, 329
TscAI	CASTG	3 cut(s)	103, 364, 379
TseFI	GTSAC	2 cut(s)	85, 466
TseI	GCWGC	2 cut(s)	229, 369
Tsp45I	GTSAC	2 cut(s)	85, 466
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	3 cut(s)	103, 364, 379
VpaK11BI	GGWCC	1 cut(s)	302
XspI	CTAG	3 cut(s)	117, 320, 413
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.