Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

30433380 .. 30434515

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19091

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCTTCCCATTTCCTTTGCCAACCTCTCTACATCACTTCAATATATTGATCTAAGCGAATCCAATGTGATGGGTAACATTCCTTATGATATTGGCAACTTGAGTAGCTTGATAGCCTTATTCTTAGGTACCAATCAATTAGGTGGGCCAATTCCAACTTCAATGGGAAGCCTACAGAATCTCCAAGCTTTGAATTTGAAGGAGAACAGATTGCAAGGACATATCCCAAATGAACTTTGTCAACTTCAGAATCTAGCCTTTTTACTGATTGGGGTAAATCAGCTCTCTGGTTCAATACCTTCTTGCTTGGGCAATCTAGCTACATCACTGAGAAGTCTATATCTGGGGTCCAATTTTTTAATTTCCACAATACCATCTACCTTGTGGGGACTTGCATATCTCTTGCACATAGACTTGTCATCCAATTCTCTAACTGGACCTCTCCCAGAAGATGTTGGTACTCTGAAAGTTGTGATAGATATAGATTTATCACACAACCGTTTATCTGGTGGGCTACCGAGCAGCATTGGGGTTCTAAAGGATTTGGTCACTCTCGCCTTGGAAAATAATAATTTAGAAGGCTCTATTCCTAGTTCATTTGGGAACTTGCTAAGCTTAGAACTCTTGGACTTGTCTAAAAACAATCCATCTGGAGTGATTCCAAAGTCTCTAGAACGACTCTTGCATCTCAACTATCTAAATTTGTCTTACAACAGACTGGAGGGAGAAATTCCAGCAGGCGGACCTTTCAAAAACTTCTCTTCTGAATCATTTGTCTCAAATGGTGTGCTCTGTGGTGAATCCCGACTGCATGTTCCATCATGCAAAAACAGTTCAGTGAAACCACCTTCAACTAAAGCTAGTAGATCCATCTTGAAGTTTATTATTCCGGGGATACTGTCAGTAATACTCCTAGTGGCCTCCCTATTGGTGTTGATAACGCGCAGGAAGAAGAATGTGAATGTTGCAATGGAGACTACCTTGTTATCTCAACCCCTATGGAGAAAAATTTCGTACTTGCAACTTCGAAGTGCAACAGATGGGTTTAATGTAGGCAACTTACTTGGCACCGGGGGTTTTGGCTCTGTGTATAAAGGAACACTAGATGGGATAGATGTGGCGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

375

Amino Acids

40.09

Weight (kDa)

7.67

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	50 - 115	2.5e-06	Leucine-rich repeat region
LRR_8	PF13855	109 - 168	3e-06	Leucine rich repeat
LRR_14	PF23598	128 - 239	4.8e-09	Leucine-rich repeat region
LRR_8	PF13855	182 - 240	1.8e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	2 cut(s)	128, 1067
AccII	CGCG	1 cut(s)	943
AciI	CCGC	1 cut(s)	741
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	4 cut(s)	193, 700, 729, 1008
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	3 cut(s)	130, 460, 1016
AfiI	CCNNNNNNNGG	1 cut(s)	740
AgsI	TTSAA	8 cut(s)	41, 162, 193, 199, 294, 751, 852, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	6 cut(s)	108, 188, 283, 320, 615, 860
AluI	AGCT	6 cut(s)	108, 188, 283, 320, 615, 860
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	3 cut(s)	672, 781, 968
AlwI	GGATC	1 cut(s)	861
AoxI	GGCC	2 cut(s)	146, 918
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	4 cut(s)	193, 700, 729, 1008
Asp700I	GAANNNNTTC	1 cut(s)	1009
Asp718I	GGTACC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	945
AspS9I	GGNCC	4 cut(s)	146, 348, 437, 743
AsuC2I	CCSGG	2 cut(s)	891, 1072
AsuHPI	GGTGA	1 cut(s)	809
AsuII	TTCGAA	1 cut(s)	1027
AvaII	GGWCC	3 cut(s)	348, 437, 743
BanI	GGYRCC	2 cut(s)	128, 1067
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	7 cut(s)	64, 382, 655, 826, 878, 1034, 1100
BciVI	GTATCC	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	891, 1072
BcoDI	GTCTC	3 cut(s)	672, 781, 968
BfaI	CTAG	7 cut(s)	254, 317, 591, 671, 861, 914, 1103
BfmI	CTRYAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	1 cut(s)	523
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	891, 1072
Bme18I	GGWCC	3 cut(s)	348, 437, 743
BmgT120I	GGNCC	4 cut(s)	146, 348, 437, 743
BmiI	GGNNCC	3 cut(s)	130, 349, 1069
BmrFI	CCNGG	2 cut(s)	891, 1072
BmsI	GCATC	1 cut(s)	694
BpmI	CTGGAG	2 cut(s)	672, 740
Bpu1102I	GCTNAGC	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	891, 1072
BsaJI	CCNNGG	3 cut(s)	558, 890, 1071
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse1I	ACTGG	2 cut(s)	439, 723
Bse3DI	GCAATG	1 cut(s)	975
BseDI	CCNNGG	3 cut(s)	558, 890, 1071
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	2 cut(s)	439, 723
BseXI	GCAGC	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	943
BshFI	GGCC	2 cut(s)	148, 920
BshNI	GGYRCC	2 cut(s)	128, 1067
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	890, 1071
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	3 cut(s)	672, 781, 968
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	148, 920
Bsp119I	TTCGAA	1 cut(s)	1027
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	2 cut(s)	49, 866
Bsp1720I	GCTNAGC	1 cut(s)	611
BspACI	CCGC	1 cut(s)	741
BspANI	GGCC	2 cut(s)	148, 920
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	3 cut(s)	130, 349, 1069
BspPI	GGATC	1 cut(s)	861
BspT104I	TTCGAA	1 cut(s)	1027
BspT107I	GGYRCC	2 cut(s)	128, 1067
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	2 cut(s)	439, 723
BssECI	CCNNGG	3 cut(s)	558, 890, 1071
BssMI	GATC	2 cut(s)	49, 866
BssT1I	CCWWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	500, 833, 900
Bst6I	CTCTTC	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	1027
BstC8I	GCNNGC	1 cut(s)	739
BstDEI	CTNAG	5 cut(s)	53, 124, 329, 611, 616
BstF5I	GGATG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	945
BstKTI	GATC	2 cut(s)	52, 869
BstMAI	GTCTC	3 cut(s)	672, 781, 968
BstMBI	GATC	2 cut(s)	49, 866
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	2 cut(s)	889, 1070
BstSFI	CTRYAG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	943
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	866
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	148, 920
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	326, 843
Cac8I	GCNNGC	1 cut(s)	739
CfoI	GCGC	1 cut(s)	945
Cfr13I	GGNCC	4 cut(s)	146, 348, 437, 743
Csp6I	GTAC	3 cut(s)	129, 459, 1015
CviAII	CATG	2 cut(s)	812, 822
CviQI	GTAC	3 cut(s)	129, 459, 1015
DdeI	CTNAG	5 cut(s)	53, 124, 329, 611, 616
DpnI	GATC	2 cut(s)	51, 868
DpnII	GATC	2 cut(s)	49, 866
Eam1104I	CTCTTC	1 cut(s)	766
EarI	CTCTTC	1 cut(s)	766
EciI	GGCGGA	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	558
Eco47I	GGWCC	3 cut(s)	348, 437, 743
Eco57I	CTGAAG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	2 cut(s)	815, 825
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	811, 821
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	7 cut(s)	254, 317, 591, 671, 861, 914, 1103
GlaI	GCGC	1 cut(s)	944
GluI	GCNGC	1 cut(s)	523
GsuI	CTGGAG	2 cut(s)	672, 740
HaeIII	GGCC	2 cut(s)	148, 920
HapII	CCGG	2 cut(s)	890, 1071
HhaI	GCGC	1 cut(s)	945
Hin1II	CATG	2 cut(s)	815, 825
Hin6I	GCGC	1 cut(s)	943
HinP1I	GCGC	1 cut(s)	943
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HindIII	AAGCTT	2 cut(s)	186, 613
HinfI	GANTC	7 cut(s)	59, 178, 250, 658, 678, 767, 800
HpaII	CCGG	2 cut(s)	890, 1071
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	249, 465, 766
Hpy188III	TCNNGA	4 cut(s)	651, 671, 804, 874
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	193, 309, 572, 858
HpyCH4III	ACNGT	3 cut(s)	500, 833, 900
HpyCH4V	TGCA	9 cut(s)	214, 395, 406, 685, 811, 825, 968, 1021, 1034
HpyF3I	CTNAG	5 cut(s)	53, 124, 329, 611, 616
Hsp92II	CATG	2 cut(s)	815, 825
HspAI	GCGC	1 cut(s)	943
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	49, 866
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	7 cut(s)	254, 317, 591, 671, 861, 914, 1103
MaeIII	GTNAC	2 cut(s)	74, 547
MalI	GATC	2 cut(s)	51, 868
MboI	GATC	2 cut(s)	49, 866
MboII	GAAGA	4 cut(s)	461, 753, 961, 964
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	35, 450, 715, 931
MroXI	GAANNNNTTC	1 cut(s)	1009
MseI	TTAA	2 cut(s)	359, 1047
MspI	CCGG	2 cut(s)	890, 1071
MspR9I	CCNGG	2 cut(s)	891, 1072
MvnI	CGCG	1 cut(s)	943
NciI	CCSGG	2 cut(s)	891, 1072
NdeII	GATC	2 cut(s)	49, 866
NlaIII	CATG	2 cut(s)	815, 825
NlaIV	GGNNCC	3 cut(s)	130, 349, 1069
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	815
NspV	TTCGAA	1 cut(s)	1027
PdmI	GAANNNNTTC	1 cut(s)	1009
PfeI	GAWTC	6 cut(s)	59, 178, 250, 658, 767, 800
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	130, 349, 1069
PspPI	GGNCC	4 cut(s)	146, 348, 437, 743
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	3 cut(s)	130, 460, 1016
RsaNI	GTAC	3 cut(s)	129, 459, 1015
SaqAI	TTAA	2 cut(s)	359, 1047
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	49, 866
Sau96I	GGNCC	4 cut(s)	146, 348, 437, 743
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	2 cut(s)	891, 1072
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	1027
SinI	GGWCC	3 cut(s)	348, 437, 743
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SsiI	CCGC	1 cut(s)	741
SspMI	CTAG	7 cut(s)	254, 317, 591, 671, 861, 914, 1103
StyD4I	CCNGG	2 cut(s)	889, 1070
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	500, 833, 900
TaqI	TCGA	1 cut(s)	1027
TfiI	GAWTC	6 cut(s)	59, 178, 250, 658, 767, 800
Tru1I	TTAA	2 cut(s)	359, 1047
Tru9I	TTAA	2 cut(s)	359, 1047
TscAI	CASTG	2 cut(s)	333, 843
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	246, 585
TspRI	CASTG	2 cut(s)	333, 843
VpaK11BI	GGWCC	3 cut(s)	348, 437, 743
XapI	RAATTY	4 cut(s)	193, 700, 729, 1008
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	1009
XspI	CTAG	7 cut(s)	254, 317, 591, 671, 861, 914, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.