Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

7530957 .. 7531415

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATTCCAAAGTCTCTAGAAGCACTCTCATATCTCAAGTATCTGAACTTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACAGGCGGACCTTTCACAAACTTGTCTGCTCAATCGTTTGTTTCAAACCGTGGACTCTGTGGTGTATCCCGATTTCATGTTCAACCATGCAAAAGGAAAAGTGGTACATCTAGCTTGAAATATGTTATTCCAGGGATCTTGTCAGCAATGCTTCTTGTGATCTCCATAATTTGGTTGGTGATGTTACGCAGAAAAAAGAATGTGGAAGCTACAATAGAGACTACCTACTTGCCTCAACCTCTGTACAGAAGAGTTTCATACCAAGAGCTTCTAAGTGCAACAAATGGATTCAATGTGAGCAACTTACTTGGCACTGGCAGTTTTGGCTCAGTTTATAAAGGAACATTTTCAGATGGGGTAGATGTGGCCATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

9.71

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	252
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	2 cut(s)	187, 326
AfiI	CCNNNNNNNGG	2 cut(s)	86, 252
AgsI	TTSAA	5 cut(s)	58, 126, 164, 199, 373
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	195, 290, 349
AluI	AGCT	3 cut(s)	195, 290, 349
Alw26I	GTCTC	2 cut(s)	18, 293
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	2 cut(s)	334, 427
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	449
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	18, 293
BfaI	CTAG	2 cut(s)	17, 192
BfuI	GTATCC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	67, 130, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 252
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	67, 130, 212
BseLI	CCNNNNNNNGG	2 cut(s)	86, 252
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	86, 252
BsmAI	GTCTC	2 cut(s)	18, 293
BsnI	GGCC	1 cut(s)	449
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	216, 240
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	422
BspPI	GGATC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	67, 130, 212
BssMI	GATC	2 cut(s)	216, 240
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	353, 409
BstDSI	CCRYGG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	219, 243
BstMAI	GTCTC	2 cut(s)	18, 293
BstMBI	GATC	2 cut(s)	216, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	186, 325
CviAII	CATG	2 cut(s)	158, 168
CviJI	RGCY	5 cut(s)	195, 290, 349, 408, 449
CviKI_1	RGCY	5 cut(s)	195, 290, 349, 408, 449
CviQI	GTAC	2 cut(s)	186, 325
DdeI	CTNAG	2 cut(s)	353, 409
DpnI	GATC	2 cut(s)	218, 242
DpnII	GATC	2 cut(s)	216, 240
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	161, 171
FaiI	YATR	9 cut(s)	31, 159, 169, 204, 248, 340, 417, 452, 454
FatI	CATG	2 cut(s)	157, 167
FauNDI	CATATG	1 cut(s)	452
FspBI	CTAG	2 cut(s)	17, 192
HaeIII	GGCC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	161, 171
HinfI	GANTC	3 cut(s)	4, 135, 369
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	45, 433
Hpy188III	TCNNGA	2 cut(s)	17, 150
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	171, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	2 cut(s)	353, 409
Hsp92II	CATG	2 cut(s)	161, 171
Kzo9I	GATC	2 cut(s)	216, 240
LpnPI	CCDG	4 cut(s)	69, 198, 225, 381
MaeI	CTAG	2 cut(s)	17, 192
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	218, 242
MboI	GATC	2 cut(s)	216, 240
MboII	GAAGA	1 cut(s)	342
MflI	RGATCY	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	75, 249
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	324, 330
Mox20I	TGGCCA	1 cut(s)	449
MroXI	GAANNNNTTC	2 cut(s)	334, 427
MscI	TGGCCA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeI	CATATG	1 cut(s)	452
NdeII	GATC	2 cut(s)	216, 240
NlaIII	CATG	2 cut(s)	161, 171
PdmI	GAANNNNTTC	2 cut(s)	334, 427
PfeI	GAWTC	2 cut(s)	4, 369
PflMI	CCANNNNNTGG	1 cut(s)	252
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	187, 326
RsaNI	GTAC	2 cut(s)	186, 325
Sau3AI	GATC	2 cut(s)	216, 240
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	6 cut(s)	94, 197, 292, 308, 322, 351
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	75, 249
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	17, 192
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	2 cut(s)	75, 249
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	4, 369
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	146, 327
TspRI	CASTG	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	2 cut(s)	334, 427
XspI	CTAG	2 cut(s)	17, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.