Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

91630 .. 92451

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgacatctgacacagtcattaatggaatatattatgccactgcatctactcctacaaaggattctacatatgttgcaaatactattctgcaaaatgggaattgcattttgcaaactgtgtcaagcaatgatctcatgttcaaacaatgcacatctccaatatgtgatgacaattgccgtggtggtagggactcaattgtagtaaatgtagctctagacaacactacatcttcaagagtttgcactcaaagtttggagaacaggcctcaacttttgaactcaaagaaagaccaatcttttgattgttccactgatgataaagctgatcttgggaataatcaatgttctgctaatggttctctagatcttaggaaacatgttggtggtaaaattctttgtccagaagaagggacatatcaactacttggaagagcttcttttcttggaagttcaatgcgaatgatggtatctctatgtgttattatggttgaaataaataatctgaaatttttgcctcttatcatgctgctacttcttatttcaaaggctgttggtaatgcatttaacgaaggcttgtatgaaggcttccctgtgattgatcattctagaaatggagaaacacttgtccttggactattatttcttagtcacttgttggcacttctgcagaacttcaagttagtgcactggcctatcgacattattttgactgctggtgcattgaaaatatatgctgagatattcagtttcttgatacaagtgaaacttgctctgtttccattgtggtgccaattgaagatgcaggatcatagttgtttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

273

Amino Acids

30.07

Weight (kDa)

5.94

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	786
AclWI	GGATC	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	390, 506
AfiI	CCNNNNNNNGG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	9 cut(s)	142, 234, 277, 453, 491, 543, 676, 724, 796
AluBI	AGCT	3 cut(s)	212, 323, 434
AluI	AGCT	3 cut(s)	212, 323, 434
Alw21I	GWGCWC	1 cut(s)	687
Alw44I	GTGCAC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	813
AoxI	GGCC	2 cut(s)	263, 689
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	2 cut(s)	390, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	786
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	598
BfaI	CTAG	3 cut(s)	215, 362, 606
BfmI	CTRYAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	788
BmsI	GCATC	2 cut(s)	53, 789
BsaJI	CCNNGG	2 cut(s)	178, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	178, 628
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	513
BshFI	GGCC	2 cut(s)	265, 691
BshNI	GGYRCC	1 cut(s)	786
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	2 cut(s)	203, 424
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	203, 424
BsnI	GGCC	2 cut(s)	265, 691
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	130, 325, 364, 598, 805
BspANI	GGCC	2 cut(s)	265, 691
BspCNI	CTCAG	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	1 cut(s)	813
BspQI	GCTCTTC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	2 cut(s)	178, 628
BssMI	GATC	5 cut(s)	130, 325, 364, 598, 805
BssT1I	CCWWGG	1 cut(s)	628
Bst4CI	ACNGT	2 cut(s)	16, 118
Bst6I	CTCTTC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	368, 644, 735
BstDSI	CCRYGG	1 cut(s)	178
BstKTI	GATC	5 cut(s)	133, 328, 367, 601, 808
BstMBI	GATC	5 cut(s)	130, 325, 364, 598, 805
BstNSI	RCATGY	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	665
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	265, 691
BtgI	CCRYGG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 309, 685
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	3 cut(s)	136, 377, 523
CviJI	RGCY	8 cut(s)	212, 265, 323, 434, 548, 573, 585, 691
CviKI_1	RGCY	8 cut(s)	212, 265, 323, 434, 548, 573, 585, 691
DdeI	CTNAG	3 cut(s)	368, 644, 735
DpnI	GATC	5 cut(s)	132, 327, 366, 600, 807
DpnII	GATC	5 cut(s)	130, 325, 364, 598, 805
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	3 cut(s)	139, 380, 526
FalI	AAGNNNNNCTT	6 cut(s)	312, 344, 421, 453, 750, 782
FaqI	GGGAC	2 cut(s)	203, 424
FatI	CATG	3 cut(s)	135, 376, 522
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	3 cut(s)	215, 362, 606
GluI	GCNGC	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	265, 691
Hin1II	CATG	3 cut(s)	139, 380, 526
HinfI	GANTC	2 cut(s)	62, 191
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	2 cut(s)	10, 504
Hpy188III	TCNNGA	6 cut(s)	215, 234, 362, 401, 606, 751
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	3 cut(s)	401, 563, 575
HpyCH4III	ACNGT	2 cut(s)	16, 118
HpyF3I	CTNAG	3 cut(s)	368, 644, 735
Hsp92II	CATG	3 cut(s)	139, 380, 526
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	5 cut(s)	130, 325, 364, 598, 805
LguI	GCTCTTC	1 cut(s)	424
LpnPI	CCDG	6 cut(s)	247, 414, 603, 673, 699, 788
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	2 cut(s)	53, 789
MaeI	CTAG	3 cut(s)	215, 362, 606
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	5 cut(s)	132, 327, 366, 600, 807
MboI	GATC	5 cut(s)	130, 325, 364, 598, 805
MboII	GAAGA	4 cut(s)	222, 416, 441, 808
MfeI	CAATTG	3 cut(s)	172, 195, 791
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	6 cut(s)	100, 172, 195, 390, 506, 791
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	276, 525
Mph1103I	ATGCAT	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	2 cut(s)	21, 564
MslI	CAYNNNNRTG	2 cut(s)	381, 784
MunI	CAATTG	3 cut(s)	172, 195, 791
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	5 cut(s)	130, 325, 364, 598, 805
NlaIII	CATG	3 cut(s)	139, 380, 526
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	265
PciI	ACATGT	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	820
PspN4I	GGNNCC	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	381, 784
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	21, 564
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	5 cut(s)	130, 325, 364, 598, 805
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	3 cut(s)	214, 325, 436
SfaNI	GCATC	2 cut(s)	53, 789
SfcI	CTRYAG	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	381, 784
Sse9I	AATT	6 cut(s)	100, 172, 195, 390, 506, 791
SseBI	AGGCCT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	215, 362, 606
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	16, 118
TaqI	TCGA	1 cut(s)	696
TasI	AATT	6 cut(s)	100, 172, 195, 390, 506, 791
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	21, 564
Tru9I	TTAA	2 cut(s)	21, 564
TscAI	CASTG	3 cut(s)	46, 316, 692
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	594
TspRI	CASTG	3 cut(s)	46, 316, 692
Tth111I	GACNNNGTC	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	683
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	2 cut(s)	390, 506
XbaI	TCTAGA	3 cut(s)	214, 361, 605
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	3 cut(s)	215, 362, 606
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.