Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

26182898 .. 26183806

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTACCTTGATAATTGTAAGCCTGGGAGACAATCAATTGAGCGGGCCAATTCCATGCTCAATGGGAAGACTACATAATCTTCAACGTTTGGGTATGTTTGATAACACATTGCAAGGATACATTCCAGATGAGCTTTGTCAACTAGAAAACTTATTTGATTTGGACTTGGGTAGGAATCAACTCTCTGGTTCTGTACCTTCTTGCTTGGGTAATCTGACAGCATTTAAACTTCTATCTTTACGGTCCAATTTGTTGAATTCCACAATACCATCTACCTTGTGGGGACTTTCAGATATCTTGCAACTAGACTTGTCATCCAATTCTCTAATTGGACCTCTATCAGGTGCTGTTGGTAATTTGAAAGTTGCTACAGACATAGATGTATCATACAACCAATTATCTGGGAGCGTACCAAGTAGCATTGGGAGTTTAGTGAGTTTGGTCAATCTCTCCTTAGCACATAACAATCTAGAAGGCCCTATTCCTAGTTCCTTTGTTACCTGTTTAAGCTTAGTACTGTTGGATTTATCTCAGAACAATCTCTCTGGAGTGATTCCAAAGTCTCTTGAAGCACTCTCATATCTCAAGTATCTGAATCTATCTTTCAACATACTCCAAGGAGAAATTCCAACCGGCGGTCCATTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCGTGGACTTCGTGGTGCATCCCATTTCCAAGTTCCACCATGCAAAAGAAAAACTAGCATAGCTATCTTGAAGTATGTTATTCCGGGGATCTTGTCAGCAATGCTTCTAGCGACCTCCATGATTTGGTTGTTGATGTTGCGTAGAAAAAAGAATGTGAAAGCAGCCGCAAATTCTATCTTCACGCCTCAAGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

292

Amino Acids

31.39

Weight (kDa)

8.6

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	163 - 204	9.5e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	3 cut(s)	45, 639, 846
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	3 cut(s)	259, 627, 850
AfaI	GTAC	4 cut(s)	7, 198, 414, 519
AfiI	CCNNNNNNNGG	3 cut(s)	344, 638, 804
AgsI	TTSAA	8 cut(s)	86, 259, 364, 572, 610, 649, 678, 751
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	3 cut(s)	136, 513, 743
AluI	AGCT	3 cut(s)	136, 513, 743
Alw26I	GTCTC	2 cut(s)	24, 570
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	47, 478
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	3 cut(s)	259, 627, 850
AspS9I	GGNCC	5 cut(s)	47, 246, 335, 479, 641
AsuC2I	CCSGG	1 cut(s)	765
AvaII	GGWCC	3 cut(s)	246, 335, 641
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	24, 570
BfaI	CTAG	6 cut(s)	146, 308, 473, 489, 735, 788
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	843, 846
BlsI	GCNGC	2 cut(s)	844, 847
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	26, 765
Bme18I	GGWCC	3 cut(s)	246, 335, 641
BmgT120I	GGNCC	5 cut(s)	47, 246, 335, 479, 641
BmrFI	CCNGG	2 cut(s)	26, 765
BmsI	GCATC	1 cut(s)	707
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	457
BpuEI	CTTGAG	2 cut(s)	572, 852
BpuMI	CCSGG	1 cut(s)	765
BsaJI	CCNNGG	4 cut(s)	25, 619, 682, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 638, 804
Bse118I	RCCGGY	1 cut(s)	635
Bse3DI	GCAATG	2 cut(s)	110, 786
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	4 cut(s)	25, 619, 682, 764
BseGI	GGATG	2 cut(s)	317, 698
BseLI	CCNNNNNNNGG	3 cut(s)	344, 638, 804
BseMI	GCAATG	2 cut(s)	110, 786
BseMII	CTCAG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	854
BshFI	GGCC	2 cut(s)	49, 480
BsiSI	CCGG	2 cut(s)	636, 764
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	344, 638, 804
BsmAI	GTCTC	2 cut(s)	24, 570
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	49, 480
Bsp143I	GATC	1 cut(s)	768
BspACI	CCGC	3 cut(s)	45, 639, 846
BspANI	GGCC	2 cut(s)	49, 480
BspCNI	CTCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	110, 786
BsrFI	RCCGGY	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	4 cut(s)	25, 619, 682, 764
BssMI	GATC	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	246, 522, 683
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	457, 514, 534
BstDSI	CCRYGG	1 cut(s)	682
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	317, 698
BstKTI	GATC	1 cut(s)	771
BstMAI	GTCTC	2 cut(s)	24, 570
BstMBI	GATC	1 cut(s)	768
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 763
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	768
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	49, 480
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	317, 698
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	5 cut(s)	47, 246, 335, 479, 641
Csp6I	GTAC	4 cut(s)	6, 197, 413, 518
CviAII	CATG	3 cut(s)	57, 720, 799
CviJI	RGCY	7 cut(s)	24, 49, 136, 480, 513, 743, 845
CviKI_1	RGCY	7 cut(s)	24, 49, 136, 480, 513, 743, 845
CviQI	GTAC	4 cut(s)	6, 197, 413, 518
DdeI	CTNAG	3 cut(s)	457, 514, 534
DpnI	GATC	1 cut(s)	770
DpnII	GATC	1 cut(s)	768
DraI	TTTAAA	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	3 cut(s)	246, 335, 641
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	3 cut(s)	60, 723, 802
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	56, 719, 798
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	843, 846
FokI	GGATG	2 cut(s)	304, 685
Fsp4HI	GCNGC	2 cut(s)	843, 846
FspBI	CTAG	6 cut(s)	146, 308, 473, 489, 735, 788
GluI	GCNGC	2 cut(s)	843, 846
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	49, 480
HapII	CCGG	2 cut(s)	636, 764
Hin1II	CATG	3 cut(s)	60, 723, 802
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	511
HinfI	GANTC	4 cut(s)	178, 556, 598, 665
HpaII	CCGG	2 cut(s)	636, 764
Hpy166II	GTNNAC	2 cut(s)	143, 686
Hpy188I	TCNGA	5 cut(s)	219, 295, 537, 597, 878
Hpy188III	TCNNGA	6 cut(s)	128, 473, 549, 569, 748, 869
Hpy8I	GTNNAC	2 cut(s)	143, 686
HpyAV	CCTTC	2 cut(s)	210, 470
HpyCH4III	ACNGT	3 cut(s)	246, 522, 683
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	4 cut(s)	115, 304, 698, 723
HpyF3I	CTNAG	3 cut(s)	457, 514, 534
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	60, 723, 802
Kzo9I	GATC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	1 cut(s)	707
MaeI	CTAG	6 cut(s)	146, 308, 473, 489, 735, 788
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	1 cut(s)	770
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	1 cut(s)	768
MboII	GAAGA	3 cut(s)	74, 81, 850
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	768
MmeI	TCCRAC	2 cut(s)	504, 656
MnlI	CCTC	3 cut(s)	348, 805, 876
MseI	TTAA	2 cut(s)	228, 509
MspI	CCGG	2 cut(s)	636, 764
MspR9I	CCNGG	2 cut(s)	26, 765
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	765
NdeII	GATC	1 cut(s)	768
NlaIII	CATG	3 cut(s)	60, 723, 802
PfeI	GAWTC	4 cut(s)	178, 556, 598, 665
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	2 cut(s)	844, 847
Psp1406I	AACGTT	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	5 cut(s)	47, 246, 335, 479, 641
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	768
RsaI	GTAC	4 cut(s)	7, 198, 414, 519
RsaNI	GTAC	4 cut(s)	6, 197, 413, 518
SaqAI	TTAA	2 cut(s)	228, 509
SatI	GCNGC	2 cut(s)	843, 846
Sau3AI	GATC	1 cut(s)	768
Sau96I	GGNCC	5 cut(s)	47, 246, 335, 479, 641
ScaI	AGTACT	1 cut(s)	519
ScrFI	CCNGG	2 cut(s)	26, 765
SfaNI	GCATC	1 cut(s)	707
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	3 cut(s)	246, 335, 641
SmlI	CTYRAG	2 cut(s)	587, 867
SmoI	CTYRAG	2 cut(s)	587, 867
SsiI	CCGC	3 cut(s)	45, 639, 846
SspMI	CTAG	6 cut(s)	146, 308, 473, 489, 735, 788
StyD4I	CCNGG	2 cut(s)	24, 763
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	246, 522, 683
TaiI	ACGT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	4 cut(s)	178, 556, 598, 665
Tru1I	TTAA	2 cut(s)	228, 509
Tru9I	TTAA	2 cut(s)	228, 509
TseI	GCWGC	1 cut(s)	842
Van91I	CCANNNNNTGG	1 cut(s)	804
VpaK11BI	GGWCC	3 cut(s)	246, 335, 641
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	259, 627, 850
XbaI	TCTAGA	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	279
XspI	CTAG	6 cut(s)	146, 308, 473, 489, 735, 788
ZrmI	AGTACT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.