Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Reverse (-)

59071854 .. 59074137

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG401900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCATTTCTGGTGGAAATGTATCTTTACCATGTGAATATCAAGGGATGCAAGGTACTCCGTATAATTGTTCTATTGCTACTGGGTCTTATTCAAATGCATATAATGGTTCTATCATGCCTAATTGTGTCACTCAGTTCAGTGCATATATATAATGTCGTTCCTAGTAATGCAATACCTCAAATTGGGTATGTACCTCCAATGATCACCAATACTGGATTTATGAATACATATGGTATGACTCCTTTTAATGTTTGTGTGGATGTTTGGAAGGAGCCTTGTGATATAGTGCAGCCTACGGTTTATAATGTGGAACAGGGATTGAAAGCATCACCTGACTCTAAAATAAGTGATGGTAGATGTGGTCCTGCTGATAATGCTCTAGGATCTTTAAAAGATGCAGTTGTGGAGGAGGTTTCCTGTGAAATTGGCAGCACTGTTGTAGATAATAATGGTAAAGGCCCTAGTGCAACGTCCAGCTTCCTTGATGATCCAAAATATCCTGAAGAGATGTCAGGTGGTGAGAGCTGTCACTTACAAAAGTGTTGTCCTAAGGTCAAGCCTGTAGGCAAAACAGAAGATGTGATTAAGGCTGCACTAGGTGCCTCTGTTGGTGAAAGCCTCTCTTTGGTAACTTTAATTGCAAAGGATCAGGTTGAATCTGCATCTCATAGGCTTGTTCCAAGTCATCCATACTCTGCCATTACTACCTCACAGAAGACTACATCTTCAACAAGTACATCAAGTGGTTGTATGGCTCAATATAATAATAGAAATGGGGGTGTACATACTTACAGTACTTCAATGCTCAGCACACTAATGACTCTAATGATTCATTTACACAGCAATTTGGTACAACTTTACACAAGGGAACGGGAGCAGAATTTACAAGGCCATCAACTTCAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

32.81

Weight (kDa)

6.19

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	602
AclWI	GGATC	3 cut(s)	394, 485, 657
AcsI	RAATTY	1 cut(s)	883
AcuI	CTGAAG	2 cut(s)	525, 887
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	6 cut(s)	57, 195, 739, 786, 799, 855
AfiI	CCNNNNNNNGG	2 cut(s)	185, 628
AgsI	TTSAA	5 cut(s)	95, 325, 659, 732, 804
AluBI	AGCT	2 cut(s)	480, 528
AluI	AGCT	2 cut(s)	480, 528
AlwI	GGATC	3 cut(s)	394, 485, 657
AoxI	GGCC	2 cut(s)	460, 892
ApeKI	GCWGC	3 cut(s)	292, 432, 593
ApoI	RAATTY	1 cut(s)	883
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AspS9I	GGNCC	2 cut(s)	365, 461
AsuHPI	GGTGA	4 cut(s)	199, 324, 533, 626
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	304, 444, 580
BccI	CCATC	2 cut(s)	347, 903
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	4 cut(s)	165, 383, 465, 599
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	3 cut(s)	293, 433, 594
BlpI	GCTNAGC	1 cut(s)	809
BlsI	GCNGC	3 cut(s)	294, 434, 595
BmcAI	AGTACT	1 cut(s)	799
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	365, 461
BmiI	GGNNCC	2 cut(s)	276, 604
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	4 cut(s)	38, 338, 388, 674
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 628
Bse1I	ACTGG	2 cut(s)	87, 220
Bse21I	CCTNAGG	1 cut(s)	552
BseGI	GGATG	3 cut(s)	53, 268, 688
BseLI	CCNNNNNNNGG	2 cut(s)	185, 628
BseMII	CTCAG	2 cut(s)	148, 823
BseNI	ACTGG	2 cut(s)	87, 220
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	304, 444, 580
BsgI	GTGCAG	2 cut(s)	311, 579
BshFI	GGCC	2 cut(s)	462, 894
BshNI	GGYRCC	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	185, 628
BsnI	GGCC	2 cut(s)	462, 894
Bsp1407I	TGTACA	1 cut(s)	784
Bsp143I	GATC	4 cut(s)	204, 386, 490, 649
Bsp1720I	GCTNAGC	1 cut(s)	809
BspANI	GGCC	2 cut(s)	462, 894
BspCNI	CTCAG	2 cut(s)	147, 822
BspLI	GGNNCC	2 cut(s)	276, 604
BspPI	GGATC	3 cut(s)	394, 485, 657
BspT107I	GGYRCC	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	784
BsrI	ACTGG	2 cut(s)	87, 220
BssMI	GATC	4 cut(s)	204, 386, 490, 649
Bst4CI	ACNGT	3 cut(s)	301, 439, 797
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	134, 552, 809
BstF5I	GGATG	3 cut(s)	53, 268, 688
BstKTI	GATC	4 cut(s)	207, 389, 493, 652
BstMBI	GATC	4 cut(s)	204, 386, 490, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 602
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	304, 444, 580
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	462, 894
BtsCI	GGATG	3 cut(s)	53, 268, 688
BtsIMutI	CAGTG	2 cut(s)	147, 435
Cfr13I	GGNCC	2 cut(s)	365, 461
Csp6I	GTAC	6 cut(s)	56, 194, 738, 785, 798, 854
CviAII	CATG	2 cut(s)	32, 117
CviQI	GTAC	6 cut(s)	56, 194, 738, 785, 798, 854
DdeI	CTNAG	3 cut(s)	134, 552, 809
DpnI	GATC	4 cut(s)	206, 388, 492, 651
DpnII	GATC	4 cut(s)	204, 386, 490, 649
DraI	TTTAAA	1 cut(s)	393
DraIII	CACNNNGTG	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	525, 887
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	102
FaeI	CATG	2 cut(s)	35, 120
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FatI	CATG	2 cut(s)	31, 116
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	293, 433, 594
FokI	GGATG	3 cut(s)	60, 275, 675
Fsp4HI	GCNGC	3 cut(s)	293, 433, 594
FspBI	CTAG	4 cut(s)	165, 383, 465, 599
GluI	GCNGC	3 cut(s)	293, 433, 594
HaeIII	GGCC	2 cut(s)	462, 894
Hin1II	CATG	2 cut(s)	35, 120
HinfI	GANTC	5 cut(s)	241, 338, 659, 823, 832
HphI	GGTGA	4 cut(s)	199, 324, 533, 626
Hpy166II	GTNNAC	1 cut(s)	785
Hpy188I	TCNGA	1 cut(s)	906
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	785
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	301, 439, 797
HpyCH4IV	ACGT	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 602
HpyF3I	CTNAG	3 cut(s)	134, 552, 809
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	35, 120
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	204, 386, 490, 649
LmnI	GCTCC	2 cut(s)	274, 877
Lsp1109I	GCAGC	3 cut(s)	304, 444, 580
LweI	GCATC	4 cut(s)	38, 338, 388, 674
MaeI	CTAG	4 cut(s)	165, 383, 465, 599
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	129, 530, 631
MalI	GATC	4 cut(s)	206, 388, 492, 651
MboI	GATC	4 cut(s)	204, 386, 490, 649
MboII	GAAGA	4 cut(s)	518, 590, 720, 730
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	7 cut(s)	66, 123, 183, 426, 639, 847, 883
MlyI	GAGTC	3 cut(s)	235, 332, 817
MnlI	CCTC	7 cut(s)	189, 207, 403, 406, 616, 632, 721
Mph1103I	ATGCAT	1 cut(s)	102
MseI	TTAA	4 cut(s)	249, 392, 588, 638
MslI	CAYNNNNRTG	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	377, 602
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	4 cut(s)	204, 386, 490, 649
NlaIII	CATG	2 cut(s)	35, 120
NlaIV	GGNNCC	2 cut(s)	276, 604
NmuCI	GTSAC	2 cut(s)	129, 530
NsiI	ATGCAT	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	659, 832
PkrI	GCNGC	3 cut(s)	294, 434, 595
PleI	GAGTC	3 cut(s)	235, 332, 817
PpsI	GAGTC	3 cut(s)	235, 332, 817
PsiI	TTATAA	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	276, 604
PspPI	GGNCC	2 cut(s)	365, 461
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	6 cut(s)	57, 195, 739, 786, 799, 855
RsaNI	GTAC	6 cut(s)	56, 194, 738, 785, 798, 854
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	249, 392, 588, 638
SatI	GCNGC	3 cut(s)	293, 433, 594
Sau3AI	GATC	4 cut(s)	204, 386, 490, 649
Sau96I	GGNCC	2 cut(s)	365, 461
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	3 cut(s)	235, 332, 817
SfaNI	GCATC	4 cut(s)	38, 338, 388, 674
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	818
Sse9I	AATT	7 cut(s)	66, 123, 183, 426, 639, 847, 883
SspMI	CTAG	4 cut(s)	165, 383, 465, 599
TaaI	ACNGT	3 cut(s)	301, 439, 797
TaiI	ACGT	1 cut(s)	476
TasI	AATT	7 cut(s)	66, 123, 183, 426, 639, 847, 883
TatI	WGTACW	3 cut(s)	737, 784, 797
TfiI	GAWTC	2 cut(s)	659, 832
Tru1I	TTAA	4 cut(s)	249, 392, 588, 638
Tru9I	TTAA	4 cut(s)	249, 392, 588, 638
TscAI	CASTG	2 cut(s)	147, 442
TseFI	GTSAC	2 cut(s)	129, 530
TseI	GCWGC	3 cut(s)	292, 432, 593
Tsp45I	GTSAC	2 cut(s)	129, 530
TspDTI	ATGAA	2 cut(s)	239, 824
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	147, 442
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	883
XspI	CTAG	4 cut(s)	165, 383, 465, 599
ZrmI	AGTACT	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.