Rh1AG087800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001112
Physical Location & Seq
Forward (+)
14985188 .. 14987035
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG087800.1

Sequence Viewer

Length: 363 bp
ATGGATGTTTGGAAGGTGCCTTGTGATATAGTCCAGCCTACGATTTATAATGTGAAACAGGGATTGAAAGTATCTCCCAACTCTAAAATAAGTGATGGTAAATGTGGTCCTGCTGATAATGCTCTAGGATCTTTAAAAGATGCAGTTGTGGAGGGGGTTTCTTGTGAGATTGGCAGTACTGTTGTAGATAATAATGGTAAGGGCCCTGGTGCAACGTCTAGCTTCCATGATGATCCAAAATCTCCTGAAGAGATGTCAGGTGGCGAGAGCTATCACTTACAGAAGTGTTGTCCTGAGGTCAAGCCTGTAGGCAAAATAGAAGATGTGATTAAGGCTGCACCAGAGCATTTCAATGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.67

Weight (kDa)

5.07

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 16
AclWI GGATC 2 cut(s) 136, 227
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 67, 352
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 222, 270
AluI AGCT 2 cut(s) 222, 270
AlwI GGATC 2 cut(s) 136, 227
AoxI GGCC 1 cut(s) 202
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 107, 202, 203
AvaII GGWCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 2 cut(s) 125, 219
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 107, 202, 203
BmiI GGNNCC 2 cut(s) 18, 204
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 205
Bse21I CCTNAGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 16
BsnI GGCC 1 cut(s) 204
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 128, 232
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 18, 204
BspPI GGATC 2 cut(s) 136, 227
BspT107I GGYRCC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 128, 232
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 131, 235
BstMBI GATC 2 cut(s) 128, 232
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 107, 202, 203
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 227
CviJI RGCY 6 cut(s) 37, 204, 222, 270, 304, 335
CviKI_1 RGCY 6 cut(s) 37, 204, 222, 270, 304, 335
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 130, 234
DpnII GATC 2 cut(s) 128, 232
DraI TTTAAA 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 2 cut(s) 202, 203
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 206
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 29, 48, 228
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 2 cut(s) 125, 219
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 245, 293
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 143, 212, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 2 cut(s) 128, 232
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 125, 219
MaeII ACGT 1 cut(s) 215
MalI GATC 2 cut(s) 130, 234
MboI GATC 2 cut(s) 128, 232
MboII GAAGA 2 cut(s) 260, 332
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 206
MnlI CCTC 2 cut(s) 145, 289
MseI TTAA 2 cut(s) 134, 330
MslI CAYNNNNRTG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 128, 232
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 18, 204
PkrI GCNGC 1 cut(s) 337
PsiI TTATAA 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 18, 204
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 107, 202, 203
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 134, 330
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 128, 232
Sau96I GGNCC 3 cut(s) 107, 202, 203
ScaI AGTACT 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 206
SetI ASST 6 cut(s) 18, 218, 224, 262, 272, 300
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 351
SspMI CTAG 2 cut(s) 125, 219
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 218
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 2 cut(s) 134, 330
Tru9I TTAA 2 cut(s) 134, 330
TseI GCWGC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 107
XspI CTAG 2 cut(s) 125, 219
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.