Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000177

Orthogroup ID

OG0001112

Physical Location & Seq

Genomic Coordinates Forward (+)

33388 .. 34199

Gene Structure 812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_177G00434110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTCAAACAATGCACATCTCCAATATATGATGACAATTGCCCTTGTGGTAGGGACTCAATTGTAGTAAATGGAGCTCTAGACAATACCACACCTTCAAGAGTTTGCACTCAAAGTTTGGAGAGCAGGACTCAACTTTTGAACTCAAAGAAAGACCAATCTTTTGATTGTTTCACCGACGGCAAAGCTGATCTTGGGAATAATCAATGTCTTGCTAATGGTTCTCTAGATCTTAGGAACCATGTTGGTGGTAAAATTCTTTGTCCAGAAGAAGGGACGTATGCACTACTTGGAAGAGCTTCTTTTCTTGGAAGTTCAATGCGAATGATGGTATCTCTATGTGTTATTATGGTTGAAATAAATAATCTGAAATTTTTGCCTCTCATCATGCTACTTCCTCTTATTTTAATGGCTGTTGGTAATACCTTCAATGAAGGCTTGTATGAAGGCTTCCCTCTTATTGATCATTCTAGAAATGGAGAAACACTTTCACTTGTTGGTGCTTCGCAGAACTTCAAGTTAGTGGACTGGCCTATCGGCATTGTTTTGAGTTTCGATCTTGGTGCATTGAAAATATATGCTGAGATATTCAATTTCTTGATACAAGTGAAACTTGCTCTGTTTTCATTGTGTTGCCAATTGAAGATGAAGGATCTGTTCCACTTGATTAGTTGGAATAATCACTCTACGCAACATGAAAAGGAAGCAAGCCATTTTGATGCAATAGTGAAAATGAGTCATCGAGTCAATCACTTTGTATCTACATTACAGCAATATGGGGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

262

Amino Acids

29.16

Weight (kDa)

6.05

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_C_terminal	PF04130	175 - 259	9.6e-09	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52530 AT5G52530 AT5G52530
fragaria_vesca	FvH4_7g30110 FvH4_7g30110 FvH4_7g30110
malus_domestica	MD01G1207000.v1.1 MD07G1277900.v1.1
prunus_persica	Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1 Prupe.2G299600_v2.0.a1
pyrus_communis	pycom01g21740 pycom01g21750 pycom01g21760 pycom07g25270 pycom07g25280
rosa_chinensis	RchiOBHm_Chr1g0378101 RchiOBHm_Chr2g0114171 RchiOBHm_Chr5g0011341 RchiOBHm_Chr5g0059131 RchiOBHm_Chr5g0059181 RchiOBHm_Chr5g0081641 RchiOBHm_Chr6g0285361 RchiOBHm_Chr7g0213301
rosa_laevigata	RLG00000022088 RLG00000026472
rosa_multiflora	Rmu_co8250551.1_g000001 Rmu_co8381583.1_g000001 Rmu_co8436805.1_g000001 Rmu_co8451701.1_g000001 Rmu_sc0000197.1_g000014 Rmu_sc0000394.1_g000032 Rmu_sc0000570.1_g000003 Rmu_sc0000596.1_g000057 Rmu_sc0000596.1_g000058 Rmu_sc0000625.1_g000001 Rmu_sc0001400.1_g000013 Rmu_sc0001465.1_g000011 Rmu_sc0020454.1_g000001 Rmu_sc0023221.1_g000001 Rmu_sc0027363.1_g000004 Rmu_sc0027363.1_g000005 Rmu_ssc0000116.1_g000016
rosa_roxburghii	Rroxscaffold_156G00440290 Rroxscaffold_177G00434110 Rroxscaffold_1G00040610 Rroxscaffold_4G00280780
rosa_rugosa	Rorug01G0406300 Rorug01G0406400
rosa_samantha	Rh1AG087800 Rh1AG423500 Rh1BG385100 Rh1CG399100 Rh1DG092500 Rh1DG416300 Rh5AG528900 Rh5DG240200 Rh6DG401900
rosa_wichuraiana	Rw1G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	255, 371
AfiI	CCNNNNNNNGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	77, 188, 299
AluI	AGCT	3 cut(s)	77, 188, 299
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	660
AoxI	GGCC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	255, 371
ArsI	GACNNNNNNTTYG	4 cut(s)	121, 146, 153, 178
Asp700I	GAANNNNTTC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BclI	TGATCA	1 cut(s)	463
BfaI	CTAG	3 cut(s)	80, 227, 471
BglII	AGATCT	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	239
BmsI	GCATC	1 cut(s)	709
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	79
BslFI	GGGAC	2 cut(s)	68, 289
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	68, 289
BsnI	GGCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	190, 229, 463, 556, 652
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	660
BspQI	GCTCTTC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	533
BssMI	GATC	5 cut(s)	190, 229, 463, 556, 652
Bst6I	CTCTTC	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	233, 582
BstKTI	GATC	5 cut(s)	193, 232, 466, 559, 655
BstMBI	GATC	5 cut(s)	190, 229, 463, 556, 652
BstX2I	RGATCY	2 cut(s)	229, 652
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	229, 652
BsuRI	GGCC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	709
CviAII	CATG	3 cut(s)	242, 388, 695
CviJI	RGCY	8 cut(s)	77, 188, 299, 413, 438, 450, 532, 711
CviKI_1	RGCY	8 cut(s)	77, 188, 299, 413, 438, 450, 532, 711
DdeI	CTNAG	2 cut(s)	233, 582
DpnI	GATC	5 cut(s)	192, 231, 465, 558, 654
DpnII	GATC	5 cut(s)	190, 229, 463, 556, 652
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	245, 391, 698
FalI	AAGNNNNNCTT	6 cut(s)	177, 209, 286, 318, 597, 629
FaqI	GGGAC	2 cut(s)	68, 289
FatI	CATG	3 cut(s)	241, 387, 694
FbaI	TGATCA	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	3 cut(s)	80, 227, 471
HaeIII	GGCC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	245, 391, 698
HinfI	GANTC	5 cut(s)	56, 130, 736, 744, 782
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	6 cut(s)	80, 99, 227, 266, 471, 598
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	6 cut(s)	105, 266, 428, 436, 440, 643
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	15, 108, 284, 566, 722
HpyF3I	CTNAG	2 cut(s)	233, 582
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	245, 391, 698
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	190, 229, 463, 556, 652
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	112, 279, 514
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	3 cut(s)	80, 227, 471
MaeII	ACGT	1 cut(s)	278
MalI	GATC	5 cut(s)	192, 231, 465, 558, 654
MboI	GATC	5 cut(s)	190, 229, 463, 556, 652
MboII	GAAGA	3 cut(s)	281, 306, 655
MfeI	CAATTG	3 cut(s)	37, 60, 638
MflI	RGATCY	2 cut(s)	229, 652
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	6 cut(s)	37, 60, 255, 371, 592, 638
MlyI	GAGTC	4 cut(s)	50, 124, 745, 753
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	3 cut(s)	390, 408, 465
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	2 cut(s)	246, 717
MunI	CAATTG	3 cut(s)	37, 60, 638
NdeII	GATC	5 cut(s)	190, 229, 463, 556, 652
NlaIII	CATG	3 cut(s)	245, 391, 698
NlaIV	GGNNCC	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	298
PleI	GAGTC	4 cut(s)	50, 124, 744, 752
PpsI	GAGTC	4 cut(s)	50, 124, 744, 752
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	229, 652
RseI	CAYNNNNRTG	2 cut(s)	246, 717
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	407
Sau3AI	GATC	5 cut(s)	190, 229, 463, 556, 652
SchI	GAGTC	4 cut(s)	50, 124, 745, 753
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	79, 97, 190, 281, 301, 428
SfaNI	GCATC	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	246, 717
Sse9I	AATT	6 cut(s)	37, 60, 255, 371, 592, 638
SspMI	CTAG	3 cut(s)	80, 227, 471
SstI	GAGCTC	1 cut(s)	79
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	555, 742
TasI	AATT	6 cut(s)	37, 60, 255, 371, 592, 638
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TspDTI	ATGAA	5 cut(s)	447, 459, 615, 662, 711
XapI	RAATTY	2 cut(s)	255, 371
XbaI	TCTAGA	3 cut(s)	79, 226, 470
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	3 cut(s)	80, 227, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.