Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

8805271 .. 8805465

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCTCTCTACTTGGAAGCCTCATGAAAAGATGCAGGAAAAGCTACATGGTACTGATTTTGACAAATTATATGAATTATCCACAATTCTTGTCGAGCATGCTCATGATAATAATATGTTATATGCTCTTGTCACTTTTAGGATAAAAAAAGAAAAGAAAAGAAGGGAAATAGATAGAAATAGGCATTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

65

Amino Acids

7.85

Weight (kDa)

9.4

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	52
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
BmsI	GCATC	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	22, 103
BstC8I	GCNNGC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	2 cut(s)	22, 103
Csp6I	GTAC	1 cut(s)	51
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	4 cut(s)	23, 47, 98, 104
CviJI	RGCY	2 cut(s)	19, 43
CviKI_1	RGCY	2 cut(s)	19, 43
CviQI	GTAC	1 cut(s)	51
FaeI	CATG	4 cut(s)	26, 50, 101, 107
FaiI	YATR	9 cut(s)	24, 48, 70, 72, 99, 105, 116, 121, 123
FatI	CATG	4 cut(s)	22, 46, 97, 103
FspEI	CC	8 cut(s)	20, 33, 33, 94, 124, 148, 149, 166
Hin1II	CATG	4 cut(s)	26, 50, 101, 107
Hpy188III	TCNNGA	2 cut(s)	23, 104
HpyAV	CCTTC	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
Hsp92II	CATG	4 cut(s)	26, 50, 101, 107
LpnPI	CCDG	1 cut(s)	20
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	130
MluCI	AATT	3 cut(s)	65, 74, 84
MnlI	CCTC	1 cut(s)	30
MseI	TTAA	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	26, 50, 101, 107
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	101
PagI	TCATGA	2 cut(s)	22, 103
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	193
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	21
SgeI	CNNG	9 cut(s)	24, 35, 47, 59, 101, 106, 110, 116, 140
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	65, 74, 84
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	65, 74, 84
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	39, 87
XceI	RCATGY	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.