Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

22012813 .. 22013134

Gene Structure 322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTTGCATCCTACTAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCACAGTGCAACAGGATGGCTGGTTAACACTGGCTGGTCCGGTGGAAGCTATGGATCAGGAAAGCGCATTAAGTTGCCCTACACCAAGAAAATCATTGACGCCATCCACTCCGGCAGCCTCTTAAACGCGAAGTACAAGAAGACTGAAGTGTTTGGACTTGAAATCCCCACTGAGGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

78

Amino Acids

8.51

Weight (kDa)

9.6

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	1 - 77	2.3e-28	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AclWI	GGATC	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
AlwI	GGATC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	23, 165
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	35, 177
BccI	CCATC	2 cut(s)	60, 161
BisI	GCNGC	2 cut(s)	24, 166
BlsI	GCNGC	2 cut(s)	25, 167
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmsI	GCATC	2 cut(s)	16, 33
BpiI	GAAGAC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	7, 71, 153
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	27, 213
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	35, 177
Bsh1236I	CGCG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	90, 162
BslI	CCNNNNNNNGG	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	28, 214
BspFNI	CGCG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	104
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	15, 36, 222
BstF5I	GGATG	3 cut(s)	7, 71, 153
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	35, 177
BstV2I	GAAGAC	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	7, 71, 153
BtsIMutI	CAGTG	3 cut(s)	61, 78, 219
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	5 cut(s)	35, 70, 84, 99, 168
CviKI_1	RGCY	5 cut(s)	35, 70, 84, 99, 168
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	15, 36, 222
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	216
FaiI	YATR	2 cut(s)	21, 102
Fnu4HI	GCNGC	2 cut(s)	24, 166
FokI	GGATG	2 cut(s)	78, 140
Fsp4HI	GCNGC	2 cut(s)	24, 166
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	24, 166
HapII	CCGG	2 cut(s)	90, 162
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	90, 162
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	7, 23, 46, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	3 cut(s)	15, 36, 222
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	17, 48, 56, 66, 70, 93, 103, 175
Lsp1109I	GCAGC	2 cut(s)	35, 177
LweI	GCATC	2 cut(s)	16, 33
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	2 cut(s)	52, 202
MnlI	CCTC	2 cut(s)	179, 217
MseI	TTAA	3 cut(s)	75, 120, 173
MspI	CCGG	2 cut(s)	90, 162
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	25, 167
PspPI	GGNCC	1 cut(s)	87
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	75, 120, 173
SatI	GCNGC	2 cut(s)	24, 166
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	87
SetI	ASST	2 cut(s)	101, 228
SfaNI	GCATC	2 cut(s)	16, 33
SinI	GGWCC	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	228
TatI	WGTACW	1 cut(s)	183
Tru1I	TTAA	3 cut(s)	75, 120, 173
Tru9I	TTAA	3 cut(s)	75, 120, 173
TscAI	CASTG	3 cut(s)	61, 85, 226
TseI	GCWGC	2 cut(s)	23, 165
TspRI	CASTG	3 cut(s)	61, 85, 226
VpaK11BI	GGWCC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.