Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

852004 .. 854140

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTCTACTCGCAGTGCTTGCTGTCGAGAAAAGGGCCGTTGGGCGCCATTTGGGTTGCCGCCTACTCTTTCAAAAAGCTCAAGAAGTCGCAGGTCAACCAGACCGACATCTCCTCCTCCGTCGATAAAATTTTGCAGGATGAATGGGATGCAGTTGCTTACAGGGTGCTGGCCTACCTTCTTCTTGGCGTTGTTCGAATATACTCAAAGAAAGTTGAATATCTGTATGATGACTGCAATGAAGTGCTGGTTAAAATCAACAAATTTGTAGTCAGTACAAAAAAGAATGCAGGCCCAGATACGCTACGTGCACCTTATTACGCTGTTACACTACCTGATAGGTTTGAACTTGATGCTTTCGATCTGGGGATCCTTGAATTTGAAGATGTCAGTGGAGGCAATGTGGTGTCCCATGAAGATATCACACTTAAAGATAGTGCATATGGAAGAGGACAATTTTATTCAGGAATGTATGATTATGAGGAATTTGATGCCTGCGACACCCCAGTCAAAGATGTACTTTCATCTCACTGGTTGGACTTTGACATGGAGCTACGAGCATCGAGTAGTGGAGCCAAGTCAGCACCAGTTATGGAGGAGTTTCATGAGAATAGGTTCTCTCAAGAAGAATGCGTTGACCTAGAAAGAATTTGTAGAGTTGAGGATGAACCTCCAAGACAAGTTAAATCATCTGGTGAAGGTCAAGAAACTAATAGAGAGCAGTTAAAGGCTCCAGATATAGCACTTCTTGGAGATGCTATTCGAGGAGAAGCAAACCCGGCAGAAAAACTTGAAGACCATAGGTTGTCTCATGAAGGTTTGAACCTTGAGACATTCAATGGGACTGAGAGAGAACCTTCCCACCATGTTAGAACATCAAGTGAAGATCGATCAGATCGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

302

Amino Acids

34.1

Weight (kDa)

4.82

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 94	7.3e-29	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	364, 377
AcsI	RAATTY	5 cut(s)	129, 263, 377, 485, 648
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	277, 519
AgsI	TTSAA	8 cut(s)	73, 218, 347, 377, 383, 794, 823, 838
AluBI	AGCT	2 cut(s)	79, 553
AluI	AGCT	2 cut(s)	79, 553
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	813, 824
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	364, 377
AoxI	GGCC	3 cut(s)	35, 171, 292
ApaLI	GTGCAC	1 cut(s)	309
ApoI	RAATTY	5 cut(s)	129, 263, 377, 485, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	35, 293
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	707
AsuII	TTCGAA	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	2 cut(s)	813, 824
BfaI	CTAG	1 cut(s)	641
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	35, 293
BmiI	GGNNCC	4 cut(s)	46, 371, 574, 732
BmrFI	CCNGG	1 cut(s)	779
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	5 cut(s)	139, 343, 481, 569, 745
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	801
BpmI	CTGGAG	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	3 cut(s)	65, 606, 848
BpuMI	CCSGG	1 cut(s)	779
Bsa29I	ATCGAT	2 cut(s)	889, 898
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 387, 417
Bse1I	ACTGG	3 cut(s)	506, 536, 587
Bse3DI	GCAATG	2 cut(s)	244, 406
BseCI	ATCGAT	2 cut(s)	889, 898
BseGI	GGATG	3 cut(s)	145, 154, 670
BseMI	GCAATG	2 cut(s)	244, 406
BseMII	CTCAG	1 cut(s)	837
BseNI	ACTGG	3 cut(s)	506, 536, 587
BseRI	GAGGAG	4 cut(s)	103, 106, 611, 780
BseSI	GKGCMC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	902
BshFI	GGCC	3 cut(s)	37, 173, 294
BshNI	GGYRCC	1 cut(s)	44
BshVI	ATCGAT	2 cut(s)	889, 898
BsiEI	CGRYCG	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	2 cut(s)	394, 856
BsmAI	GTCTC	2 cut(s)	813, 824
BsmFI	GGGAC	2 cut(s)	394, 856
BsmI	GAATGC	2 cut(s)	292, 635
BsnI	GGCC	3 cut(s)	37, 173, 294
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	3 cut(s)	37, 173, 294
BspCNI	CTCAG	1 cut(s)	838
BspDI	ATCGAT	2 cut(s)	889, 898
BspHI	TCATGA	2 cut(s)	604, 811
BspLI	GGNNCC	4 cut(s)	46, 371, 574, 732
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	364, 377
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	244, 406
BsrI	ACTGG	3 cut(s)	506, 536, 587
BssMI	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
BssNI	GRCGYC	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	442
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	20, 171, 292, 496
BstDEI	CTNAG	1 cut(s)	846
BstF5I	GGATG	3 cut(s)	145, 154, 670
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	6 cut(s)	364, 372, 889, 893, 898, 902
BstMAI	GTCTC	2 cut(s)	813, 824
BstMBI	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
BstMCI	CGRYCG	1 cut(s)	902
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 581, 779
BstSCI	CCNGG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	801
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
Bsu15I	ATCGAT	2 cut(s)	889, 898
BsuRI	GGCC	3 cut(s)	37, 173, 294
BsuTUI	ATCGAT	2 cut(s)	889, 898
BtsCI	GGATG	3 cut(s)	145, 154, 670
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	20, 397, 529
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	4 cut(s)	20, 171, 292, 496
CciI	TCATGA	2 cut(s)	604, 811
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	35, 293
ClaI	ATCGAT	2 cut(s)	889, 898
Csp6I	GTAC	2 cut(s)	276, 518
CviAII	CATG	5 cut(s)	413, 547, 605, 812, 866
CviJI	RGCY	7 cut(s)	37, 79, 173, 294, 553, 575, 731
CviKI_1	RGCY	7 cut(s)	37, 79, 173, 294, 553, 575, 731
CviQI	GTAC	2 cut(s)	276, 518
DdeI	CTNAG	1 cut(s)	846
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	6 cut(s)	363, 371, 888, 892, 897, 901
DpnII	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	5 cut(s)	416, 550, 608, 815, 869
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	2 cut(s)	394, 856
FatI	CATG	5 cut(s)	412, 546, 604, 811, 865
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	3 cut(s)	152, 161, 677
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	37, 173, 294
HapII	CCGG	1 cut(s)	779
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	416, 550, 608, 815, 869
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	97, 637
HindII	GTYRAC	2 cut(s)	97, 637
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	3 cut(s)	97, 311, 637
Hpy188I	TCNGA	1 cut(s)	895
Hpy188III	TCNNGA	9 cut(s)	27, 82, 465, 605, 623, 704, 734, 812, 903
Hpy8I	GTNNAC	3 cut(s)	97, 311, 637
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	188, 692, 809, 867
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	136, 152, 237, 290, 311, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 581, 779
HpyF3I	CTNAG	1 cut(s)	846
HpySE526I	ACGT	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	416, 550, 608, 815, 869
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
LmnI	GCTCC	3 cut(s)	550, 572, 736
LweI	GCATC	5 cut(s)	139, 343, 481, 569, 745
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	6 cut(s)	363, 371, 888, 892, 897, 901
MboI	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
MboII	GAAGA	7 cut(s)	173, 395, 428, 459, 638, 806, 896
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	6 cut(s)	129, 263, 377, 455, 485, 648
Mly113I	GGCGCC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	9 cut(s)	124, 127, 389, 443, 475, 589, 655, 681, 758
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	4 cut(s)	252, 429, 684, 725
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	779
Mva1269I	GAATGC	2 cut(s)	292, 635
MwoI	GCNNNNNNNGC	3 cut(s)	19, 581, 779
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	779
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
NlaIII	CATG	5 cut(s)	416, 550, 608, 815, 869
NlaIV	GGNNCC	4 cut(s)	46, 371, 574, 732
NspV	TTCGAA	1 cut(s)	196
PagI	TCATGA	2 cut(s)	604, 811
PcsI	WCGNNNNNNNCGW	1 cut(s)	895
PctI	GAATGC	2 cut(s)	292, 635
PdmI	GAANNNNTTC	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	902
PluTI	GGCGCC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	308
PspN4I	GGNNCC	4 cut(s)	46, 371, 574, 732
PspPI	GGNCC	2 cut(s)	35, 293
PsuI	RGATCY	1 cut(s)	369
PvuI	CGATCG	1 cut(s)	902
RsaI	GTAC	2 cut(s)	277, 519
RsaNI	GTAC	2 cut(s)	276, 518
SaqAI	TTAA	4 cut(s)	252, 429, 684, 725
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	6 cut(s)	361, 369, 886, 890, 895, 899
Sau96I	GGNCC	2 cut(s)	35, 293
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	5 cut(s)	139, 343, 481, 569, 745
SfoI	GGCGCC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	196
SmlI	CTYRAG	3 cut(s)	80, 621, 827
SmoI	CTYRAG	3 cut(s)	80, 621, 827
Sse9I	AATT	6 cut(s)	129, 263, 377, 455, 485, 648
SsiI	CCGC	1 cut(s)	60
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	777
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	8 cut(s)	26, 123, 196, 360, 563, 763, 889, 898
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	6 cut(s)	129, 263, 377, 455, 485, 648
TatI	WGTACW	2 cut(s)	275, 517
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	252, 429, 684, 725
Tru9I	TTAA	4 cut(s)	252, 429, 684, 725
TscAI	CASTG	3 cut(s)	20, 397, 536
TspDTI	ATGAA	7 cut(s)	156, 255, 429, 513, 593, 681, 828
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	20, 397, 536
VneI	GTGCAC	1 cut(s)	309
XapI	RAATTY	5 cut(s)	129, 263, 377, 485, 648
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.