Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

854232 .. 856081

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAAAGTTGCAGAGTTGTACAGTATCTCAAGAAGACTACATGGACATTGATACATTTAATGGGGTGAAGCAACCTCGAGAACTTGTTTGTCCATCTGGTGAAGCAAATCATAATGACGGAGAGCCAAAAAAACTACCCGAGATGATTTCACCAGATAGTAAAGAACGTCAAATTATTATGCAAGAAGATCCAGATCCTCTCTCTGTTTCATGTGATGGAACTCCTGGTGTCAAAATCCCCGATGCAGGTGTTATTGCACCAAAGTTTATGGTTATTCATACACCAGCCTCTAAGGAGTTCGCTCGATTTTCTAAGAAAAGAAAATGTGTCATGGATGATTTGACAGTCCTGCCTAATGAGATAATCAGGAAAAGCATAAATGATCCAAGTGACTTGGTTTCTAAAAGAAAAAAAGTTCCTCAAACTGCCCTTGCTGTCTGGAAAGCCAGTCGAATTGTAAATCTTTGCTGTGATTTCTCAGAGCCATTGATACCTGCTGCTGTTTCGCAAGAACTTGTATCCCTCTTCTGCAAAAAGAAATTAAAGATTACAGTACCTGCCAAACCAGTTGCCCCTCCAGAAAAGTTAGATGCGCCTGAATCTCCAAGTGTTGTTAGGTCAGAGCAAATAGAAATTGCACCAGAAACACCCATTCTTCGCTCACAAGCAATGAAATCATTTGGGAGTCCAAAGAGCCCTGATGCTACTGATATGGATATCGTAACACCTGAGATATCTGGAAGGGTAGAGAAAGAGGAGCCACCCCTTGACAGTGAGCAAGCTGCACCATCTGGATATGCAGAAGAAGTACGATTTATGGACAGGGATCAGGAACATGATTTCAATTTGTTGAATGAGGACATTGATTTGTACGAAGGGGTTAACCCACAACTGGAGGGATTGTCAGCGAGAACAAGGTATGGTGGATCGCCCTCCCGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

316

Amino Acids

34.76

Weight (kDa)

4.96

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	3 cut(s)	239, 505, 568
AclWI	GGATC	5 cut(s)	185, 191, 380, 837, 937
AfaI	GTAC	4 cut(s)	22, 558, 813, 875
AfiI	CCNNNNNNNGG	3 cut(s)	248, 895, 941
AgsI	TTSAA	2 cut(s)	847, 856
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	785
AluI	AGCT	1 cut(s)	785
AlwI	GGATC	5 cut(s)	185, 191, 380, 837, 937
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	3 cut(s)	78, 140, 939
ApeKI	GCWGC	2 cut(s)	500, 785
AspLEI	GCGC	1 cut(s)	598
AsuC2I	CCSGG	2 cut(s)	940, 941
AsuHPI	GGTGA	3 cut(s)	79, 113, 144
AvaI	CYCGRG	3 cut(s)	78, 140, 939
BanII	GRGCYC	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	487, 772
BccI	CCATC	3 cut(s)	103, 212, 799
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	940, 941
BfuAI	ACCTGC	3 cut(s)	239, 505, 568
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	501, 786
BlsI	GCNGC	2 cut(s)	502, 787
Bme1390I	CCNGG	3 cut(s)	228, 940, 941
BmeT110I	CYCGRG	3 cut(s)	78, 140, 939
BmiI	GGNNCC	1 cut(s)	762
BmrFI	CCNGG	3 cut(s)	228, 940, 941
BmsI	GCATC	3 cut(s)	235, 583, 694
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	2 cut(s)	564, 917
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	940, 941
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	939, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 895, 941
Bse1I	ACTGG	3 cut(s)	450, 569, 900
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	939, 940
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	248, 895, 941
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	495, 723
BseNI	ACTGG	3 cut(s)	450, 569, 900
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	487, 772
BsgI	GTGCAG	1 cut(s)	771
BsiHKCI	CYCGRG	3 cut(s)	78, 140, 939
BsiSI	CCGG	1 cut(s)	940
BslI	CCNNNNNNNGG	3 cut(s)	248, 895, 941
BsoBI	CYCGRG	3 cut(s)	78, 140, 939
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	190, 196, 385, 829, 929
BspCNI	CTCAG	2 cut(s)	494, 724
BspLI	GGNNCC	1 cut(s)	762
BspMI	ACCTGC	3 cut(s)	239, 505, 568
BspPI	GGATC	5 cut(s)	185, 191, 380, 837, 937
BsrDI	GCAATG	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	450, 569, 900
BssECI	CCNNGG	2 cut(s)	939, 940
BssMI	GATC	5 cut(s)	190, 196, 385, 829, 929
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	25, 349, 556, 776
Bst6I	CTCTTC	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	4 cut(s)	294, 315, 481, 732
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	5 cut(s)	193, 199, 388, 832, 932
BstMBI	GATC	5 cut(s)	190, 196, 385, 829, 929
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	3 cut(s)	226, 938, 939
BstV1I	GCAGC	2 cut(s)	487, 772
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	190, 196
BstYI	RGATCY	2 cut(s)	190, 196
BsuI	GTATCC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	781
BveI	ACCTGC	3 cut(s)	239, 505, 568
Cac8I	GCNNGC	1 cut(s)	783
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	598
Cfr9I	CCCGGG	1 cut(s)	939
Csp6I	GTAC	4 cut(s)	21, 557, 812, 874
CviAII	CATG	4 cut(s)	43, 213, 334, 839
CviJI	RGCY	7 cut(s)	127, 290, 449, 487, 699, 763, 785
CviKI_1	RGCY	7 cut(s)	127, 290, 449, 487, 699, 763, 785
CviQI	GTAC	4 cut(s)	21, 557, 812, 874
DdeI	CTNAG	4 cut(s)	294, 315, 481, 732
DpnI	GATC	5 cut(s)	192, 198, 387, 831, 931
DpnII	GATC	5 cut(s)	190, 196, 385, 829, 929
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	701
Eco32I	GATATC	2 cut(s)	721, 738
Eco88I	CYCGRG	3 cut(s)	78, 140, 939
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	2 cut(s)	721, 738
EcoT38I	GRGCYC	1 cut(s)	701
FaeI	CATG	4 cut(s)	46, 216, 337, 842
FatI	CATG	4 cut(s)	42, 212, 333, 838
Fnu4HI	GCNGC	2 cut(s)	501, 786
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	501, 786
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	2 cut(s)	501, 786
GsuI	CTGGAG	2 cut(s)	564, 917
HapII	CCGG	1 cut(s)	940
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	46, 216, 337, 842
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	2 cut(s)	602, 688
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	1 cut(s)	940
HphI	GGTGA	3 cut(s)	79, 113, 144
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188I	TCNGA	2 cut(s)	484, 625
Hpy188III	TCNNGA	9 cut(s)	32, 80, 194, 370, 442, 581, 741, 795, 833
Hpy8I	GTNNAC	1 cut(s)	886
HpyAV	CCTTC	2 cut(s)	738, 872
HpyCH4III	ACNGT	4 cut(s)	25, 349, 556, 776
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	8 cut(s)	13, 184, 248, 260, 534, 641, 788, 803
HpyF3I	CTNAG	4 cut(s)	294, 315, 481, 732
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	46, 216, 337, 842
HspAI	GCGC	1 cut(s)	596
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	190, 196, 385, 829, 929
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	2 cut(s)	487, 772
LweI	GCATC	3 cut(s)	235, 583, 694
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	392, 724
MalI	GATC	5 cut(s)	192, 198, 387, 831, 931
MboI	GATC	5 cut(s)	190, 196, 385, 829, 929
MboII	GAAGA	5 cut(s)	47, 200, 520, 650, 818
MflI	RGATCY	2 cut(s)	190, 196
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	5 cut(s)	174, 456, 542, 636, 847
MlyI	GAGTC	1 cut(s)	697
MseI	TTAA	4 cut(s)	60, 545, 885, 946
MspI	CCGG	1 cut(s)	940
MspR9I	CCNGG	3 cut(s)	228, 940, 941
MvaI	CCWGG	1 cut(s)	228
NciI	CCSGG	2 cut(s)	940, 941
NdeII	GATC	5 cut(s)	190, 196, 385, 829, 929
NlaIII	CATG	4 cut(s)	46, 216, 337, 842
NlaIV	GGNNCC	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	502, 787
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	762
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	190, 196
RsaI	GTAC	4 cut(s)	22, 558, 813, 875
RsaNI	GTAC	4 cut(s)	21, 557, 812, 874
SaqAI	TTAA	4 cut(s)	60, 545, 885, 946
SatI	GCNGC	2 cut(s)	501, 786
Sau3AI	GATC	5 cut(s)	190, 196, 385, 829, 929
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	228, 940, 941
SduI	GDGCHC	1 cut(s)	701
SetI	ASST	9 cut(s)	79, 172, 253, 499, 562, 623, 733, 787, 923
SfaNI	GCATC	3 cut(s)	235, 583, 694
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmaI	CCCGGG	1 cut(s)	941
SmlI	CTYRAG	2 cut(s)	30, 78
SmoI	CTYRAG	2 cut(s)	30, 78
Sse9I	AATT	5 cut(s)	174, 456, 542, 636, 847
StyD4I	CCNGG	3 cut(s)	226, 938, 939
TaaI	ACNGT	4 cut(s)	25, 349, 556, 776
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	79, 307, 454
TasI	AATT	5 cut(s)	174, 456, 542, 636, 847
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	4 cut(s)	60, 545, 885, 946
Tru9I	TTAA	4 cut(s)	60, 545, 885, 946
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	500, 785
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	201, 269, 689
TspGWI	ACGGA	1 cut(s)	135
TspMI	CCCGGG	1 cut(s)	939
TspRI	CASTG	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.