pycom17g08160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000643
Physical Location & Seq
Reverse (-)
6088082 .. 6089461
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGAGTGTAGTTGAATACCAAGACGCCATTAACGCACCAGACCTTCAGGTGTGGAACAACGCCGCCTTCGACAACGAAGACTCCGAAGGCGGCTCCTCCGTCGTGAAGGCTTCCTGGTCCGATATACTCCAACCCCTTTCGCTGAATTGCTCTTCCGAGTCGTTTGAATCGGGTTGCAGCAAAGAGAATCTGAGCCCCGCGATTCTGAAAACCCCTGTCTGCGTCAAATCTTCGGTGCCCTTCAAGCCGCTGGACACAAATACGAATCTTGATCCCTTCTCGGCGGTTGCAAAGAAGAAGGGTCTTGCAGAGGTTGAAGAAGGAGAAGAGAGAGTTCGCGATGAGGGGAAGATTGATGCGGAGATTGAAGAGATTGAGAAGGAGATTAGTAGATTGAATTCGAGGCTCGAAGCGCTTAAACTTGAAAAGGCCGAGAGAAACGAGAAGGCGGTAGAGAAGCGTGGAAGGGTTGTGGCGGCGAAGTTCATGGAGCAGAAACAAAGTGTGAAGAATTTGGATGGGTTGAAAAAGATTGAGTCTATGATGATGAGTGTGAGGTCGAAGGTTAATCGGAGAGGAATGAGTTTGGGGCCGTCTGAGATTGTAGCTGGAGCCGGATTTCAGAGGCCGAGTAAGTTCGAGATCACCCCTGTTCAGGCAACGCAGAGTCGCAGGAAATCGTGCTTTTGGAAGCTTCAGGACATCGATGAATTGAGGGCTACGAAAGAGAGGGGCAAGAGTTTGAGTTTGAGTCCGAAATCGAGGAAAACTGTGTCCAAGGTTCAAGCTCCGAAACAGGCTGCAACTACTGTTGGAGGGTCCAAAAGGCCTGTGAAGAAGCAAGACAAGGTTCTTGCATCAATTGGACCCAAGAAGCTTTTTAAAGACGGAGCCGAGAAGTCTGTGCCTGCTAAGAAAACACCATTCAAGCCTGGGAGGGTTGTGCCTAGTAGGTACAATCAGATTGGGAATTCGGCAGTGAGTGATGGTCGGAAGCGGTCTTGGCCTGAGGATGATAAGGATGACAGTAAGAGAGGTGACAAGAGGCGGGTCTCCTTGGTTGGAAAGCCGCATGGCATTGCCCGTGAGACATCCAGGAGTCAAGGACCGGAGTGCCGGGTGAAGAAGAGGTGGGAGATTCCAAGTGAGATAGTGGTGTACCAAGGTGCAGCAGAGGATAACAAGTCACCTTCAGTTATTGCTGAGATAGGAGATGTGCTTCCAAAAATTAAGACAGTCCGATGTGGTATTGATACTCCGAGGGGTTCGGGACCAGCCAAAAGGGCTGCTGAATTGGTTGGGATGAAATCCTACTTTAGCACCAATGGGGAGGTTTGCCATGAATTGAGTTTTGCAGAAGAAGGTGCTGAAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

50.44

Weight (kDa)

9.34

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 2 cut(s) 200, 339
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 3 cut(s) 397, 511, 970
AcuI CTGAAG 3 cut(s) 29, 680, 1176
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 956, 1160
AfeI AGCGCT 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 655
AjnI CCWGG 3 cut(s) 113, 931, 1094
AluBI AGCT 4 cut(s) 608, 694, 788, 877
AluI AGCT 4 cut(s) 608, 694, 788, 877
Alw26I GTCTC 2 cut(s) 1057, 1082
AlwI GGATC 1 cut(s) 266
Aor51HI AGCGCT 1 cut(s) 414
AoxI GGCC 5 cut(s) 429, 590, 626, 827, 1004
ApeKI GCWGC 4 cut(s) 177, 800, 1169, 1286
ApoI RAATTY 3 cut(s) 397, 511, 970
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 6 cut(s) 117, 590, 819, 866, 1106, 1271
AsuC2I CCSGG 1 cut(s) 1118
AsuHPI GGTGA 4 cut(s) 637, 1049, 1132, 1179
AvaII GGWCC 5 cut(s) 117, 819, 866, 1106, 1271
AxyI CCTNAGG 1 cut(s) 1008
BaeGI GKGCMC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 189, 787, 1181, 1273
BccI CCATC 2 cut(s) 512, 980
BceAI ACGGC 1 cut(s) 577
BciT130I CCWGG 3 cut(s) 115, 933, 1096
BcnI CCSGG 1 cut(s) 1118
BcoDI GTCTC 2 cut(s) 1057, 1082
BfaI CTAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 1283
BisI GCNGC 9 cut(s) 63, 91, 178, 248, 477, 801, 1070, 1170, 1287
BlsI GCNGC 9 cut(s) 64, 92, 179, 249, 478, 802, 1071, 1171, 1288
Bme1390I CCNGG 4 cut(s) 115, 933, 1096, 1118
Bme18I GGWCC 5 cut(s) 117, 819, 866, 1106, 1271
BmgT120I GGNCC 6 cut(s) 117, 590, 819, 866, 1106, 1271
BmiI GGNNCC 8 cut(s) 94, 237, 591, 613, 820, 868, 892, 1272
BmrFI CCNGG 4 cut(s) 115, 933, 1096, 1118
BmsI GCATC 2 cut(s) 346, 866
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 630
BpuMI CCSGG 1 cut(s) 1118
Bsa29I ATCGAT 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 5 cut(s) 777, 932, 1056, 1162, 1259
BsaWI WCCGGW 1 cut(s) 1108
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse21I CCTNAGG 1 cut(s) 1008
Bse3DI GCAATG 1 cut(s) 1077
BseBI CCWGG 3 cut(s) 115, 933, 1096
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 5 cut(s) 777, 932, 1056, 1162, 1259
BseGI GGATG 5 cut(s) 523, 1018, 1027, 1091, 1308
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 4 cut(s) 182, 588, 999, 1194
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 4 cut(s) 189, 787, 1181, 1273
BsgI GTGCAG 1 cut(s) 1188
Bsh1236I CGCG 2 cut(s) 200, 339
BshFI GGCC 5 cut(s) 431, 592, 628, 829, 1006
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 705
BsiSI CCGG 3 cut(s) 615, 1109, 1117
BslFI GGGAC 1 cut(s) 1284
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 2 cut(s) 1057, 1082
BsmFI GGGAC 1 cut(s) 1284
BsnI GGCC 5 cut(s) 431, 592, 628, 829, 1006
Bso31I GGTCTC 1 cut(s) 1057
Bsp1286I GDGCHC 2 cut(s) 197, 240
Bsp143I GATC 2 cut(s) 271, 642
Bsp68I TCGCGA 1 cut(s) 339
BspANI GGCC 5 cut(s) 431, 592, 628, 829, 1006
BspCNI CTCAG 4 cut(s) 183, 589, 1000, 1195
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 2 cut(s) 200, 339
BspLI GGNNCC 8 cut(s) 94, 237, 591, 613, 820, 868, 892, 1272
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 1077
BssECI CCNNGG 5 cut(s) 777, 932, 1056, 1162, 1259
BssMI GATC 2 cut(s) 271, 642
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 3 cut(s) 777, 1056, 1162
Bst2UI CCWGG 3 cut(s) 115, 933, 1096
Bst4CI ACNGT 4 cut(s) 772, 811, 1028, 1237
Bst6I CTCTTC 4 cut(s) 157, 321, 363, 1121
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 5 cut(s) 191, 597, 912, 1008, 1203
BstF5I GGATG 5 cut(s) 523, 1018, 1027, 1091, 1308
BstFNI CGCG 2 cut(s) 200, 339
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 274, 645
BstMAI GTCTC 2 cut(s) 1057, 1082
BstMBI GATC 2 cut(s) 271, 642
BstMWI GCNNNNNNNGC 5 cut(s) 32, 244, 412, 1003, 1283
BstNI CCWGG 3 cut(s) 115, 933, 1096
BstSCI CCNGG 4 cut(s) 113, 931, 1094, 1116
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 2 cut(s) 200, 339
BstV1I GCAGC 4 cut(s) 189, 787, 1181, 1273
BstV2I GAAGAC 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 705
Bsu36I CCTNAGG 1 cut(s) 1008
BsuRI GGCC 5 cut(s) 431, 592, 628, 829, 1006
BsuTUI ATCGAT 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 5 cut(s) 523, 1018, 1027, 1091, 1308
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 1 cut(s) 984
BtuMI TCGCGA 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 909
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 6 cut(s) 117, 590, 819, 866, 1106, 1271
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 2 cut(s) 32, 211
Csp6I GTAC 2 cut(s) 955, 1159
CviAII CATG 3 cut(s) 487, 1073, 1340
CviQI GTAC 2 cut(s) 955, 1159
DdeI CTNAG 5 cut(s) 191, 597, 912, 1008, 1203
DpnI GATC 2 cut(s) 273, 644
DpnII GATC 2 cut(s) 271, 642
DraI TTTAAA 1 cut(s) 883
Eam1104I CTCTTC 4 cut(s) 157, 321, 363, 1121
EarI CTCTTC 4 cut(s) 157, 321, 363, 1121
Eco130I CCWWGG 3 cut(s) 777, 1056, 1162
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 1057
Eco47I GGWCC 5 cut(s) 117, 819, 866, 1106, 1271
Eco47III AGCGCT 1 cut(s) 414
Eco57I CTGAAG 3 cut(s) 29, 680, 1176
Eco81I CCTNAGG 1 cut(s) 1008
EcoRI GAATTC 2 cut(s) 397, 970
EcoRII CCWGG 3 cut(s) 113, 931, 1094
EcoT14I CCWWGG 3 cut(s) 777, 1056, 1162
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 3 cut(s) 777, 1056, 1162
FaeI CATG 3 cut(s) 490, 1076, 1343
FaiI YATR 5 cut(s) 125, 488, 542, 1074, 1341
FaqI GGGAC 1 cut(s) 1284
FatI CATG 3 cut(s) 486, 1072, 1339
FauI CCCGC 2 cut(s) 205, 1041
Fnu4HI GCNGC 9 cut(s) 63, 91, 178, 248, 477, 801, 1070, 1170, 1287
FokI GGATG 5 cut(s) 530, 1025, 1034, 1078, 1315
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 9 cut(s) 63, 91, 178, 248, 477, 801, 1070, 1170, 1287
FspBI CTAG 1 cut(s) 948
GlaI GCGC 1 cut(s) 414
GluI GCNGC 9 cut(s) 63, 91, 178, 248, 477, 801, 1070, 1170, 1287
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 5 cut(s) 431, 592, 628, 829, 1006
HapII CCGG 3 cut(s) 615, 1109, 1117
HgaI GACGC 2 cut(s) 32, 211
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 490, 1076, 1343
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 2 cut(s) 692, 875
HpaII CCGG 3 cut(s) 615, 1109, 1117
HphI GGTGA 4 cut(s) 637, 1049, 1132, 1179
Hpy166II GTNNAC 1 cut(s) 1159
Hpy188III TCNNGA 6 cut(s) 103, 269, 338, 640, 698, 1269
Hpy8I GTNNAC 1 cut(s) 1159
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 772, 811, 1028, 1237
HpyCH4V TGCA 7 cut(s) 177, 290, 308, 803, 857, 1169, 1355
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 244, 412, 1003, 1283
HpyF3I CTNAG 5 cut(s) 191, 597, 912, 1008, 1203
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 490, 1076, 1343
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 271, 642
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 5 cut(s) 98, 490, 611, 793, 890
Lsp1109I GCAGC 4 cut(s) 189, 787, 1181, 1273
LweI GCATC 2 cut(s) 346, 866
MaeI CTAG 1 cut(s) 948
MaeIII GTNAC 2 cut(s) 1037, 1185
MalI GATC 2 cut(s) 273, 644
MboI GATC 2 cut(s) 271, 642
MfeI CAATTG 1 cut(s) 861
MhlI GDGCHC 2 cut(s) 197, 240
MluCI AATT 9 cut(s) 145, 397, 511, 710, 861, 970, 1227, 1292, 1343
MlyI GAGTC 6 cut(s) 74, 167, 545, 676, 760, 1108
MmeI TCCRAC 4 cut(s) 154, 793, 971, 1042
MseI TTAA 5 cut(s) 30, 417, 567, 882, 1230
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 3 cut(s) 615, 1109, 1117
MspR9I CCNGG 4 cut(s) 115, 933, 1096, 1118
MunI CAATTG 1 cut(s) 861
MvaI CCWGG 3 cut(s) 115, 933, 1096
MvnI CGCG 2 cut(s) 200, 339
MwoI GCNNNNNNNGC 5 cut(s) 32, 244, 412, 1003, 1283
NciI CCSGG 1 cut(s) 1118
NdeII GATC 2 cut(s) 271, 642
NlaIII CATG 3 cut(s) 490, 1076, 1343
NlaIV GGNNCC 8 cut(s) 94, 237, 591, 613, 820, 868, 892, 1272
NmeAIII GCCGAG 4 cut(s) 260, 457, 654, 919
NmuCI GTSAC 2 cut(s) 1037, 1185
NruI TCGCGA 1 cut(s) 339
PceI AGGCCT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 81
PfeI GAWTC 5 cut(s) 167, 187, 202, 265, 1138
PfoI TCCNGGA 1 cut(s) 1094
PkrI GCNGC 9 cut(s) 64, 92, 179, 249, 478, 802, 1071, 1171, 1288
PleI GAGTC 6 cut(s) 74, 166, 544, 675, 759, 1107
PpsI GAGTC 6 cut(s) 74, 166, 544, 675, 759, 1107
Psp6I CCWGG 3 cut(s) 113, 931, 1094
PspGI CCWGG 3 cut(s) 113, 931, 1094
PspN4I GGNNCC 8 cut(s) 94, 237, 591, 613, 820, 868, 892, 1272
PspPI GGNCC 6 cut(s) 117, 590, 819, 866, 1106, 1271
RruI TCGCGA 1 cut(s) 339
RsaI GTAC 2 cut(s) 956, 1160
RsaNI GTAC 2 cut(s) 955, 1159
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 5 cut(s) 30, 417, 567, 882, 1230
SatI GCNGC 9 cut(s) 63, 91, 178, 248, 477, 801, 1070, 1170, 1287
Sau3AI GATC 2 cut(s) 271, 642
Sau96I GGNCC 6 cut(s) 117, 590, 819, 866, 1106, 1271
SchI GAGTC 6 cut(s) 74, 167, 545, 676, 760, 1108
ScrFI CCNGG 4 cut(s) 115, 933, 1096, 1118
SduI GDGCHC 2 cut(s) 197, 240
SfaNI GCATC 2 cut(s) 346, 866
SinI GGWCC 5 cut(s) 117, 819, 866, 1106, 1271
Sse9I AATT 9 cut(s) 145, 397, 511, 710, 861, 970, 1227, 1292, 1343
SseBI AGGCCT 1 cut(s) 829
SspMI CTAG 1 cut(s) 948
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 4 cut(s) 113, 931, 1094, 1116
StyI CCWWGG 3 cut(s) 777, 1056, 1162
TaaI ACNGT 4 cut(s) 772, 811, 1028, 1237
TaqI TCGA 7 cut(s) 69, 401, 408, 560, 639, 705, 761
TasI AATT 9 cut(s) 145, 397, 511, 710, 861, 970, 1227, 1292, 1343
TauI GCSGC 5 cut(s) 65, 93, 250, 479, 1072
TfiI GAWTC 5 cut(s) 167, 187, 202, 265, 1138
Tru1I TTAA 5 cut(s) 30, 417, 567, 882, 1230
Tru9I TTAA 5 cut(s) 30, 417, 567, 882, 1230
TscAI CASTG 1 cut(s) 984
TseFI GTSAC 2 cut(s) 1037, 1185
TseI GCWGC 4 cut(s) 177, 800, 1169, 1286
Tsp45I GTSAC 2 cut(s) 1037, 1185
TspDTI ATGAA 4 cut(s) 475, 723, 1319, 1356
TspGWI ACGGA 2 cut(s) 88, 903
TspRI CASTG 1 cut(s) 984
VpaK11BI GGWCC 5 cut(s) 117, 819, 866, 1106, 1271
XapI RAATTY 3 cut(s) 397, 511, 970
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.