RchiOBHm_Chr2g0093451

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001755
Physical Location & Seq
Forward (+)
6723444 .. 6726313
2870 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCTCCGTTTCAGAGACGAATTGGAGCAACTCCGAAAGAAGTCTGGGGCCATTGATAAAGCACTTCTCTTCCCTTGTCAAGTGGACGAGGGCGGCATCTGCCAAGGCACCCCAATCAAATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTCGAGACTGTTGTGGAAGGAACTGACATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAGCTCTTTGCTGTAGATTCTGTTAATAGTAACATTGTTCGGATTACTCCTCCGTTGTCTCAATGTATGCAAAAGTATTTACTTGCAGTTGACACATTTACTTCAAAGTATTTACTTTCAAGGTATCATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

126

Amino Acids

13.98

Weight (kDa)

6.08

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AciI CCGC 2 cut(s) 116, 229
AclWI GGATC 1 cut(s) 220
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 4 cut(s) 22, 223, 351, 366
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 3 cut(s) 32, 176, 309
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 24, 71
AspS9I GGNCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcoDI GTCTC 3 cut(s) 32, 176, 309
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 72, 132
BmsI GCATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 13, 247
BseRI GAGGAG 1 cut(s) 285
BshFI GGCC 2 cut(s) 26, 73
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 252
BsmAI GTCTC 3 cut(s) 32, 176, 309
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 26, 73
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 2 cut(s) 116, 229
BspANI GGCC 2 cut(s) 26, 73
BspLI GGNNCC 2 cut(s) 72, 132
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 13, 247
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 3 cut(s) 32, 176, 309
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 2 cut(s) 26, 73
BtsCI GGATG 2 cut(s) 13, 247
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 3 cut(s) 26, 73, 250
CviKI_1 RGCY 3 cut(s) 26, 73, 250
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 2 cut(s) 314, 379
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 20, 254
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 26, 73
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 108, 337
Hpy188I TCNGA 4 cut(s) 37, 58, 238, 288
Hpy188III TCNNGA 3 cut(s) 14, 181, 223
Hpy8I GTNNAC 2 cut(s) 108, 337
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 316, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 27, 53
LweI GCATC 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 84
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 43
MnlI CCTC 4 cut(s) 37, 105, 232, 306
MseI TTAA 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 72, 132
PceI AGGCCT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 72, 132
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 252
SetI ASST 2 cut(s) 252, 371
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 1 cut(s) 43
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 2 cut(s) 116, 229
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 26
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 43
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TspGWI ACGGA 2 cut(s) 19, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.