Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Reverse (-)

42062820 .. 42066827

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGGCAAAGACCTGTTTTTGAAGCTGGCACAATACCGGGTGCGGGTCAATCTTAACGATTCTGATCGGCAAAAGGCTGAGGAACGTACCCACCTCTTCATCAAAAGATTCCCTGAGTGGCAACGGAAAGCGATAATCCTTGGCATCGTCAGGACTACGAGAAGCCTCCTTAGACCTAGGTATATAGATGAGGAGCTTATTCGAAAATTTATTGAAAAAATGAAGGAGTGGAAGAAGCTGGTGGTGAAGGATGATGATTTCGAGATGATGTCGGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGACGCTGTTGGAGGAGGGGGAAGAAGAACCGACAGAACAAGACAGGAGGGTGTGGTCGTACCTTTCCAGTAGCCTGGGATTCAGAATGAAGCCAGGAGAAGATGTCAAGATCGTCAGGCTGATGATTCCTTTCTTAGCCCAATGTTGTGGACGTCTTCCACCAGAAGGACCCGCGAGATGTGTCCACATCAAAATGTTCATACACCAGTTCCAAACATATATCATTAAATATTGCCTTAGCGACCTGAACGACGTGGAGATGCTGCTCGATGTCATTAAGGCTGTCGAGTCAAGTCCAGCAAATCCAGAAAATAAGTTAAAGAAAAATATACCAACTAAAGAAGAAGGGATTGCTGCCCCCATGTACCTCTTAAAACTAGAGAGAAGAGAATATGGAGACCACAGCAGAAAAGGACCTGCAGAAGAAAATCTTGTGGCAAATCCTATAGCTATTGTTCAATCTGCTGAAGGACAGGAATCTTATGAGAAGTCCAATGAGTCTTTACAGGTGAACTTTGCTGCCAGTGATGCTGGTATAGATCTAGCTACCCACTCAGTTGGTCTGGATGATAATGAAAAAGATGGAAACTGTGATGGGAGTGGAGAGTTTGGAGACTACAGCAGAAAAGGACCTGCAGAAGAAAATCTTGTGGCAACTCCTATAGCTACTGTTCAATCAGCTGATCATCATGAAAACCAAATTTATCCAGCAGCTAACTCACACAAAGTTAAAGAAAAATATCGTACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

40.48

Weight (kDa)

5.11

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	463
Acc36I	ACCTGC	2 cut(s)	733, 949
AccII	CGCG	1 cut(s)	482
AciI	CCGC	2 cut(s)	46, 480
AcsI	RAATTY	2 cut(s)	209, 1008
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	4 cut(s)	91, 368, 674, 1054
AfiI	CCNNNNNNNGG	2 cut(s)	46, 473
AgsI	TTSAA	4 cut(s)	25, 218, 767, 983
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	381, 400
AluBI	AGCT	8 cut(s)	28, 199, 241, 758, 854, 974, 989, 1022
AluI	AGCT	8 cut(s)	28, 199, 241, 758, 854, 974, 989, 1022
Alw26I	GTCTC	3 cut(s)	302, 699, 915
ApeKI	GCWGC	4 cut(s)	571, 662, 827, 1019
ApoI	RAATTY	2 cut(s)	209, 1008
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	476, 722, 938
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	259, 829
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	3 cut(s)	476, 722, 938
AvrII	CCTAGG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	558, 649, 814, 1031
BccI	CCATC	2 cut(s)	884, 896
BciT130I	CCWGG	2 cut(s)	383, 402
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	302, 699, 915
BfaI	CTAG	3 cut(s)	180, 686, 851
BfmI	CTRYAG	5 cut(s)	726, 753, 925, 942, 969
BfuAI	ACCTGC	2 cut(s)	733, 949
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	4 cut(s)	572, 663, 828, 1020
BlnI	CCTAGG	1 cut(s)	179
BlsI	GCNGC	4 cut(s)	573, 664, 829, 1021
Bme1390I	CCNGG	3 cut(s)	41, 383, 402
Bme18I	GGWCC	3 cut(s)	476, 722, 938
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	476, 722, 938
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	3 cut(s)	41, 383, 402
BmsI	GCATC	3 cut(s)	156, 558, 826
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	81, 545
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	3 cut(s)	142, 179, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 473
Bse1I	ACTGG	3 cut(s)	375, 514, 831
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	383, 402
BseDI	CCNNGG	3 cut(s)	142, 179, 382
BseGI	GGATG	3 cut(s)	259, 286, 880
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	46, 473
BseMII	CTCAG	3 cut(s)	72, 108, 876
BseNI	ACTGG	3 cut(s)	375, 514, 831
BseXI	GCAGC	4 cut(s)	558, 649, 814, 1031
Bsh1236I	CGCG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	46, 473
BsmAI	GTCTC	3 cut(s)	302, 699, 915
BsmBI	CGTCTC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	699
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	67, 417, 847, 991
BspACI	CCGC	2 cut(s)	46, 480
BspCNI	CTCAG	3 cut(s)	73, 109, 875
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	1 cut(s)	478
BspMAI	CTGCAG	2 cut(s)	730, 946
BspMI	ACCTGC	2 cut(s)	733, 949
BspT104I	TTCGAA	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	699
BsrI	ACTGG	3 cut(s)	375, 514, 831
BssECI	CCNNGG	3 cut(s)	142, 179, 382
BssMI	GATC	4 cut(s)	67, 417, 847, 991
BssNI	GRCGYC	1 cut(s)	460
BssT1I	CCWWGG	2 cut(s)	142, 179
Bst2UI	CCWGG	2 cut(s)	383, 402
Bst4CI	ACNGT	2 cut(s)	899, 979
Bst6I	CTCTTC	2 cut(s)	104, 688
BstACI	GRCGYC	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	6 cut(s)	81, 117, 173, 442, 545, 862
BstF5I	GGATG	3 cut(s)	259, 286, 880
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	4 cut(s)	70, 420, 850, 994
BstMAI	GTCTC	3 cut(s)	302, 699, 915
BstMBI	GATC	4 cut(s)	67, 417, 847, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNI	CCWGG	2 cut(s)	383, 402
BstSCI	CCNGG	3 cut(s)	39, 381, 400
BstSFI	CTRYAG	5 cut(s)	726, 753, 925, 942, 969
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	4 cut(s)	558, 649, 814, 1031
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	847
BstXI	CCANNNNNNTGG	3 cut(s)	382, 455, 866
BstYI	RGATCY	1 cut(s)	847
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	259, 286, 880
BtsIMutI	CAGTG	1 cut(s)	838
BveI	ACCTGC	2 cut(s)	733, 949
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	997
Cfr13I	GGNCC	3 cut(s)	476, 722, 938
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	4 cut(s)	90, 367, 673, 1053
CviAII	CATG	2 cut(s)	670, 998
CviQI	GTAC	4 cut(s)	90, 367, 673, 1053
DdeI	CTNAG	6 cut(s)	81, 117, 173, 442, 545, 862
DpnI	GATC	4 cut(s)	69, 419, 849, 993
DpnII	GATC	4 cut(s)	67, 417, 847, 991
Eam1104I	CTCTTC	2 cut(s)	104, 688
EarI	CTCTTC	2 cut(s)	104, 688
Eco130I	CCWWGG	2 cut(s)	142, 179
Eco31I	GGTCTC	1 cut(s)	699
Eco47I	GGWCC	3 cut(s)	476, 722, 938
Eco57I	CTGAAG	1 cut(s)	795
EcoO109I	RGGNCCY	3 cut(s)	476, 722, 938
EcoRII	CCWGG	2 cut(s)	381, 400
EcoT14I	CCWWGG	2 cut(s)	142, 179
ErhI	CCWWGG	2 cut(s)	142, 179
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	2 cut(s)	673, 1001
FalI	AAGNNNNNCTT	4 cut(s)	723, 755, 939, 971
FatI	CATG	2 cut(s)	669, 997
FauI	CCCGC	2 cut(s)	39, 487
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	4 cut(s)	572, 663, 828, 1020
FokI	GGATG	3 cut(s)	266, 293, 887
Fsp4HI	GCNGC	4 cut(s)	572, 663, 828, 1020
FspBI	CTAG	3 cut(s)	180, 686, 851
GluI	GCNGC	4 cut(s)	572, 663, 828, 1020
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	673, 1001
HinfI	GANTC	7 cut(s)	62, 111, 387, 433, 596, 785, 806
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	2 cut(s)	259, 829
Hpy166II	GTNNAC	3 cut(s)	458, 493, 820
Hpy188I	TCNGA	2 cut(s)	67, 392
Hpy188III	TCNNGA	6 cut(s)	154, 265, 415, 614, 872, 998
Hpy8I	GTNNAC	3 cut(s)	458, 493, 820
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	5 cut(s)	220, 244, 467, 647, 770
HpyCH4III	ACNGT	2 cut(s)	899, 979
HpyCH4IV	ACGT	3 cut(s)	88, 460, 561
HpyCH4V	TGCA	2 cut(s)	728, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	6 cut(s)	81, 117, 173, 442, 545, 862
HpySE526I	ACGT	3 cut(s)	88, 460, 561
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	673, 1001
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	4 cut(s)	67, 417, 847, 991
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	4 cut(s)	558, 649, 814, 1031
LweI	GCATC	3 cut(s)	156, 558, 826
MaeI	CTAG	3 cut(s)	180, 686, 851
MaeII	ACGT	3 cut(s)	88, 460, 561
MalI	GATC	4 cut(s)	69, 419, 849, 993
MboI	GATC	4 cut(s)	67, 417, 847, 991
MflI	RGATCY	1 cut(s)	847
MluCI	AATT	2 cut(s)	209, 1008
MlyI	GAGTC	2 cut(s)	605, 815
MmeI	TCCRAC	1 cut(s)	297
MseI	TTAA	6 cut(s)	57, 534, 585, 626, 680, 1038
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	41, 383, 402
MvaI	CCWGG	2 cut(s)	383, 402
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	4 cut(s)	67, 417, 847, 991
NlaIII	CATG	2 cut(s)	673, 1001
NlaIV	GGNNCC	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	205
PagI	TCATGA	1 cut(s)	997
PfeI	GAWTC	5 cut(s)	62, 111, 387, 433, 785
PkrI	GCNGC	4 cut(s)	573, 664, 829, 1021
PleI	GAGTC	2 cut(s)	604, 814
PpsI	GAGTC	2 cut(s)	604, 814
PpuMI	RGGWCCY	3 cut(s)	476, 722, 938
Psp5II	RGGWCCY	3 cut(s)	476, 722, 938
Psp6I	CCWGG	2 cut(s)	381, 400
PspGI	CCWGG	2 cut(s)	381, 400
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	476, 722, 938
PspPPI	RGGWCCY	3 cut(s)	476, 722, 938
PstI	CTGCAG	2 cut(s)	730, 946
PsuI	RGATCY	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	4 cut(s)	91, 368, 674, 1054
RsaNI	GTAC	4 cut(s)	90, 367, 673, 1053
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	6 cut(s)	57, 534, 585, 626, 680, 1038
SatI	GCNGC	4 cut(s)	572, 663, 828, 1020
Sau3AI	GATC	4 cut(s)	67, 417, 847, 991
Sau96I	GGNCC	3 cut(s)	476, 722, 938
SchI	GAGTC	2 cut(s)	605, 815
ScrFI	CCNGG	3 cut(s)	41, 383, 402
SfaNI	GCATC	3 cut(s)	156, 558, 826
SfcI	CTRYAG	5 cut(s)	726, 753, 925, 942, 969
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	3 cut(s)	476, 722, 938
SmiMI	CAYNNNNRTG	1 cut(s)	500
Sse9I	AATT	2 cut(s)	209, 1008
SsiI	CCGC	2 cut(s)	46, 480
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	3 cut(s)	180, 686, 851
StyD4I	CCNGG	3 cut(s)	39, 381, 400
StyI	CCWWGG	2 cut(s)	142, 179
TaaI	ACNGT	2 cut(s)	899, 979
TaiI	ACGT	3 cut(s)	91, 463, 564
TaqI	TCGA	4 cut(s)	205, 264, 576, 594
TasI	AATT	2 cut(s)	209, 1008
TfiI	GAWTC	5 cut(s)	62, 111, 387, 433, 785
Tru1I	TTAA	6 cut(s)	57, 534, 585, 626, 680, 1038
Tru9I	TTAA	6 cut(s)	57, 534, 585, 626, 680, 1038
TscAI	CASTG	1 cut(s)	838
TseI	GCWGC	4 cut(s)	571, 662, 827, 1019
TspDTI	ATGAA	6 cut(s)	91, 239, 410, 496, 897, 1014
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	3 cut(s)	476, 722, 938
XapI	RAATTY	2 cut(s)	209, 1008
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	3 cut(s)	180, 686, 851
ZraI	GACGTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.