Rh2CG329700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001352
Physical Location & Seq
Forward (+)
43037016 .. 43038970
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG329700.1

Sequence Viewer

Length: 198 bp
ATGTACCAGTTCCTAAAATATATCGATGAATATTGCCTTAGCGACCTGAACGACGTGGGGATGTTGCTCGACGTCATTGAGGCTGTCAAGTCAAGTCCAGCAAATCCAGAAAATAAGTTAAAGAAGAAAATCGTACCAAGTAAAGAAGAAGGGATTGCTGCCCCCATGTACCTCTCAAATCTAGAAGAGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.42

Weight (kDa)

4.99

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 5, 135, 170
AjiI CACGTC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 145
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 7
BseCI ATCGAT 1 cut(s) 24
BseGI GGATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 24
BspDI ATCGAT 1 cut(s) 24
BsrI ACTGG 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 24
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 3 cut(s) 4, 134, 169
CviAII CATG 1 cut(s) 166
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
CviQI GTAC 3 cut(s) 4, 134, 169
DdeI CTNAG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
FaeI CATG 1 cut(s) 169
FaiI YATR 2 cut(s) 21, 167
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 107, 182
Hpy99I CGWCG 2 cut(s) 56, 74
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 54, 72
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 54, 72
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 169
LpnPI CCDG 4 cut(s) 20, 59, 111, 120
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 54, 72
MboII GAAGA 3 cut(s) 136, 158, 197
MnlI CCTC 2 cut(s) 73, 182
MseI TTAA 1 cut(s) 119
NlaIII CATG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 160
RsaI GTAC 3 cut(s) 5, 135, 170
RsaNI GTAC 3 cut(s) 4, 134, 169
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 159
SetI ASST 5 cut(s) 48, 57, 75, 174, 197
SspI AATATT 1 cut(s) 32
SspMI CTAG 1 cut(s) 182
TaiI ACGT 2 cut(s) 57, 75
TaqI TCGA 2 cut(s) 24, 69
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 42
XbaI TCTAGA 1 cut(s) 181
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.