endonuclease activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1729, 2782 |
| Acc36I | ACCTGC | 2 cut(s) | 2140, 3649 |
| AccB1I | GGYRCC | 4 cut(s) | 161, 416, 761, 3538 |
| AccII | CGCG | 3 cut(s) | 114, 116, 391 |
| AccIII | TCCGGA | 1 cut(s) | 2062 |
| AclWI | GGATC | 9 cut(s) | 12, 298, 919, 1202, 1431, 2363, 2746, 3400, 4020 |
| AcoI | YGGCCR | 1 cut(s) | 3975 |
| AcsI | RAATTY | 5 cut(s) | 2199, 2356, 2705, 2890, 2913 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AdeI | CACNNNGTG | 1 cut(s) | 55 |
| AfaI | GTAC | 2 cut(s) | 1167, 3618 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 372, 1420, 1427, 3572, 3573, 3574, 3784 |
| AflIII | ACRYGT | 3 cut(s) | 1039, 1168, 1195 |
| AjnI | CCWGG | 3 cut(s) | 3070, 3178, 4028 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3764, 3796 |
| AleI | CACNNNNGTG | 1 cut(s) | 96 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 616, 648 |
| Alw21I | GWGCWC | 4 cut(s) | 28, 178, 3749, 3905 |
| Alw26I | GTCTC | 6 cut(s) | 193, 632, 1387, 1890, 2106, 3944 |
| Alw44I | GTGCAC | 1 cut(s) | 174 |
| AlwI | GGATC | 9 cut(s) | 12, 298, 919, 1202, 1431, 2363, 2746, 3400, 4020 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 326, 1547, 2372 |
| Ama87I | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| Aor13HI | TCCGGA | 1 cut(s) | 2062 |
| AoxI | GGCC | 4 cut(s) | 74, 1738, 3789, 3975 |
| ApaLI | GTGCAC | 1 cut(s) | 174 |
| ApoI | RAATTY | 5 cut(s) | 2199, 2356, 2705, 2890, 2913 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3358, 3390, 3817, 3849 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 954, 1346, 2754 |
| AspLEI | GCGC | 4 cut(s) | 116, 118, 164, 4052 |
| AspS9I | GGNCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| AsuC2I | CCSGG | 2 cut(s) | 231, 3699 |
| AsuNHI | GCTAGC | 1 cut(s) | 1409 |
| AvaI | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| AvaII | GGWCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| BaeGI | GKGCMC | 3 cut(s) | 42, 178, 4036 |
| BanI | GGYRCC | 4 cut(s) | 161, 416, 761, 3538 |
| BanII | GRGCYC | 3 cut(s) | 28, 1537, 3905 |
| BauI | CACGAG | 1 cut(s) | 41 |
| BbsI | GAAGAC | 3 cut(s) | 477, 536, 2778 |
| Bbv12I | GWGCWC | 4 cut(s) | 28, 178, 3749, 3905 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 155, 189, 2771, 2805 |
| BciT130I | CCWGG | 3 cut(s) | 3072, 3180, 4030 |
| BclI | TGATCA | 4 cut(s) | 577, 802, 2182, 2680 |
| BcnI | CCSGG | 2 cut(s) | 231, 3699 |
| BcoDI | GTCTC | 6 cut(s) | 193, 632, 1387, 1890, 2106, 3944 |
| BfaI | CTAG | 5 cut(s) | 102, 842, 1410, 2841, 2895 |
| BfoI | RGCGCY | 1 cut(s) | 165 |
| BfuAI | ACCTGC | 2 cut(s) | 2140, 3649 |
| BglII | AGATCT | 2 cut(s) | 13, 2564 |
| BlpI | GCTNAGC | 1 cut(s) | 2928 |
| Bme1390I | CCNGG | 5 cut(s) | 231, 3072, 3180, 3699, 4030 |
| Bme18I | GGWCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| BmeT110I | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| BmgT120I | GGNCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| BmiI | GGNNCC | 8 cut(s) | 136, 163, 418, 763, 1534, 1851, 3244, 3540 |
| BmrFI | CCNGG | 5 cut(s) | 231, 3072, 3180, 3699, 4030 |
| BmrI | ACTGGG | 4 cut(s) | 2508, 3397, 3666, 3759 |
| BmtI | GCTAGC | 1 cut(s) | 1413 |
| BmuI | ACTGGG | 4 cut(s) | 2508, 3397, 3666, 3759 |
| BpiI | GAAGAC | 3 cut(s) | 477, 536, 2778 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 191, 223, 881, 913 |
| BpmI | CTGGAG | 4 cut(s) | 1746, 1755, 1914, 2130 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2928 |
| BpuEI | CTTGAG | 2 cut(s) | 2619, 3778 |
| BpuMI | CCSGG | 2 cut(s) | 231, 3699 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaI | GGTCTC | 1 cut(s) | 1890 |
| BsaWI | WCCGGW | 4 cut(s) | 365, 1420, 2062, 2422 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1362, 1392 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 372, 1420, 1427, 3572, 3573, 3574, 3784 |
| Bse118I | RCCGGY | 3 cut(s) | 2021, 2237, 3973 |
| Bse3DI | GCAATG | 4 cut(s) | 2968, 3222, 3723, 3876 |
| BseAI | TCCGGA | 1 cut(s) | 2062 |
| BseBI | CCWGG | 3 cut(s) | 3072, 3180, 4030 |
| BseGI | GGATG | 7 cut(s) | 388, 814, 2335, 2641, 2850, 3583, 3943 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 372, 1420, 1427, 3572, 3573, 3574, 3784 |
| BseMI | GCAATG | 4 cut(s) | 2968, 3222, 3723, 3876 |
| BsePI | GCGCGC | 1 cut(s) | 114 |
| BseRI | GAGGAG | 2 cut(s) | 2358, 3837 |
| BseSI | GKGCMC | 3 cut(s) | 42, 178, 4036 |
| BseYI | CCCAGC | 2 cut(s) | 3002, 3110 |
| Bsh1236I | CGCG | 3 cut(s) | 114, 116, 391 |
| BshFI | GGCC | 4 cut(s) | 76, 1740, 3791, 3977 |
| BshNI | GGYRCC | 4 cut(s) | 161, 416, 761, 3538 |
| BsiHKAI | GWGCWC | 4 cut(s) | 28, 178, 3749, 3905 |
| BsiHKCI | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| BsiSI | CCGG | 9 cut(s) | 231, 366, 1421, 2022, 2063, 2238, 2423, 3698, 3974 |
| BslFI | GGGAC | 2 cut(s) | 998, 1735 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 372, 1420, 1427, 3572, 3573, 3574, 3784 |
| BsmAI | GTCTC | 6 cut(s) | 193, 632, 1387, 1890, 2106, 3944 |
| BsmFI | GGGAC | 2 cut(s) | 998, 1735 |
| BsmI | GAATGC | 2 cut(s) | 439, 1156 |
| BsnI | GGCC | 4 cut(s) | 76, 1740, 3791, 3977 |
| Bso31I | GGTCTC | 1 cut(s) | 1890 |
| BsoBI | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| Bsp1286I | GDGCHC | 7 cut(s) | 28, 42, 178, 1537, 3749, 3905, 4036 |
| Bsp13I | TCCGGA | 1 cut(s) | 2062 |
| Bsp1407I | TGTACA | 1 cut(s) | 1165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2928 |
| Bsp19I | CCATGG | 2 cut(s) | 3055, 3163 |
| BspANI | GGCC | 4 cut(s) | 76, 1740, 3791, 3977 |
| BspEI | TCCGGA | 1 cut(s) | 2062 |
| BspFNI | CGCG | 3 cut(s) | 114, 116, 391 |
| BspHI | TCATGA | 2 cut(s) | 2683, 3549 |
| BspLI | GGNNCC | 8 cut(s) | 136, 163, 418, 763, 1534, 1851, 3244, 3540 |
| BspMAI | CTGCAG | 5 cut(s) | 1543, 1762, 1921, 2137, 3616 |
| BspMI | ACCTGC | 2 cut(s) | 2140, 3649 |
| BspOI | GCTAGC | 1 cut(s) | 1413 |
| BspPI | GGATC | 9 cut(s) | 12, 298, 919, 1202, 1431, 2363, 2746, 3400, 4020 |
| BspT107I | GGYRCC | 4 cut(s) | 161, 416, 761, 3538 |
| BspTNI | GGTCTC | 1 cut(s) | 1890 |
| BsrDI | GCAATG | 4 cut(s) | 2968, 3222, 3723, 3876 |
| BsrFI | RCCGGY | 3 cut(s) | 2021, 2237, 3973 |
| BsrGI | TGTACA | 1 cut(s) | 1165 |
| BssAI | RCCGGY | 3 cut(s) | 2021, 2237, 3973 |
| BssHII | GCGCGC | 1 cut(s) | 114 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssSI | CACGAG | 1 cut(s) | 41 |
| BssT1I | CCWWGG | 3 cut(s) | 3055, 3163, 3729 |
| Bst2BI | CACGAG | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 3 cut(s) | 3072, 3180, 4030 |
| Bst6I | CTCTTC | 6 cut(s) | 1140, 1390, 3035, 3143, 3711, 4001 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstAUI | TGTACA | 1 cut(s) | 1165 |
| BstC8I | GCNNGC | 7 cut(s) | 24, 116, 160, 1411, 1439, 2959, 3975 |
| BstDSI | CCRYGG | 2 cut(s) | 3055, 3163 |
| BstEII | GGTNACC | 2 cut(s) | 2425, 2510 |
| BstF5I | GGATG | 7 cut(s) | 388, 814, 2335, 2641, 2850, 3583, 3943 |
| BstFNI | CGCG | 3 cut(s) | 114, 116, 391 |
| BstH2I | RGCGCY | 1 cut(s) | 165 |
| BstHHI | GCGC | 4 cut(s) | 116, 118, 164, 4052 |
| BstMAI | GTCTC | 6 cut(s) | 193, 632, 1387, 1890, 2106, 3944 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 743, 1180, 1652, 2027, 2996, 3442 |
| BstNI | CCWGG | 3 cut(s) | 3072, 3180, 4030 |
| BstNSI | RCATGY | 3 cut(s) | 1043, 1172, 1199 |
| BstPI | GGTNACC | 2 cut(s) | 2425, 2510 |
| BstSCI | CCNGG | 5 cut(s) | 229, 3070, 3178, 3697, 4028 |
| BstSLI | GKGCMC | 3 cut(s) | 42, 178, 4036 |
| BstUI | CGCG | 3 cut(s) | 114, 116, 391 |
| BstV2I | GAAGAC | 3 cut(s) | 477, 536, 2778 |
| BstX2I | RGATCY | 7 cut(s) | 13, 290, 1423, 2368, 2564, 3392, 4025 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 455, 1682, 2057, 2605 |
| BstYI | RGATCY | 7 cut(s) | 13, 290, 1423, 2368, 2564, 3392, 4025 |
| BsuRI | GGCC | 4 cut(s) | 76, 1740, 3791, 3977 |
| BtgI | CCRYGG | 2 cut(s) | 3055, 3163 |
| BtsCI | GGATG | 7 cut(s) | 388, 814, 2335, 2641, 2850, 3583, 3943 |
| BtsIMutI | CAGTG | 9 cut(s) | 507, 765, 1374, 1654, 2869, 3747, 3815, 3883, 3903 |
| BveI | ACCTGC | 2 cut(s) | 2140, 3649 |
| Cac8I | GCNNGC | 7 cut(s) | 24, 116, 160, 1411, 1439, 2959, 3975 |
| CaiI | CAGNNNCTG | 3 cut(s) | 326, 1547, 2372 |
| CciI | TCATGA | 2 cut(s) | 2683, 3549 |
| CfoI | GCGC | 4 cut(s) | 116, 118, 164, 4052 |
| Cfr10I | RCCGGY | 3 cut(s) | 2021, 2237, 3973 |
| Cfr13I | GGNCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| CpoI | CGGWCCG | 1 cut(s) | 233 |
| CseI | GACGC | 1 cut(s) | 120 |
| Csp6I | GTAC | 2 cut(s) | 1166, 3617 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3330, 3365, 3641, 3676 |
| CspI | CGGWCCG | 1 cut(s) | 233 |
| CviQI | GTAC | 2 cut(s) | 1166, 3617 |
| DinI | GGCGCC | 1 cut(s) | 163 |
| DraI | TTTAAA | 1 cut(s) | 1507 |
| DraIII | CACNNNGTG | 1 cut(s) | 55 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1729, 2782 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1729, 2782 |
| EaeI | YGGCCR | 1 cut(s) | 3975 |
| Eam1104I | CTCTTC | 6 cut(s) | 1140, 1390, 3035, 3143, 3711, 4001 |
| EarI | CTCTTC | 6 cut(s) | 1140, 1390, 3035, 3143, 3711, 4001 |
| EciI | GGCGGA | 1 cut(s) | 291 |
| Ecl136II | GAGCTC | 2 cut(s) | 26, 3903 |
| Eco130I | CCWWGG | 3 cut(s) | 3055, 3163, 3729 |
| Eco147I | AGGCCT | 1 cut(s) | 3791 |
| Eco24I | GRGCYC | 3 cut(s) | 28, 1537, 3905 |
| Eco31I | GGTCTC | 1 cut(s) | 1890 |
| Eco32I | GATATC | 1 cut(s) | 3983 |
| Eco47I | GGWCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| Eco53kI | GAGCTC | 2 cut(s) | 26, 3903 |
| Eco88I | CYCGRG | 3 cut(s) | 94, 2780, 3567 |
| Eco91I | GGTNACC | 2 cut(s) | 2425, 2510 |
| EcoICRI | GAGCTC | 2 cut(s) | 26, 3903 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2129 |
| EcoO65I | GGTNACC | 2 cut(s) | 2425, 2510 |
| EcoRI | GAATTC | 1 cut(s) | 2890 |
| EcoRII | CCWGG | 3 cut(s) | 3070, 3178, 4028 |
| EcoRV | GATATC | 1 cut(s) | 3983 |
| EcoT14I | CCWWGG | 3 cut(s) | 3055, 3163, 3729 |
| EcoT22I | ATGCAT | 4 cut(s) | 514, 739, 996, 2539 |
| EcoT38I | GRGCYC | 3 cut(s) | 28, 1537, 3905 |
| EgeI | GGCGCC | 1 cut(s) | 163 |
| EheI | GGCGCC | 1 cut(s) | 163 |
| ErhI | CCWWGG | 3 cut(s) | 3055, 3163, 3729 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1398, 1430, 1755, 1787, 2130, 2162, 3819, 3851 |
| FaqI | GGGAC | 2 cut(s) | 998, 1735 |
| FauI | CCCGC | 2 cut(s) | 396, 2641 |
| FbaI | TGATCA | 4 cut(s) | 577, 802, 2182, 2680 |
| FokI | GGATG | 7 cut(s) | 395, 821, 2342, 2628, 2857, 3590, 3950 |
| FriOI | GRGCYC | 3 cut(s) | 28, 1537, 3905 |
| FspBI | CTAG | 5 cut(s) | 102, 842, 1410, 2841, 2895 |
| GlaI | GCGC | 4 cut(s) | 115, 117, 163, 4051 |
| GsaI | CCCAGC | 2 cut(s) | 3006, 3114 |
| GsuI | CTGGAG | 4 cut(s) | 1746, 1755, 1914, 2130 |
| HaeII | RGCGCY | 1 cut(s) | 165 |
| HaeIII | GGCC | 4 cut(s) | 76, 1740, 3791, 3977 |
| HapII | CCGG | 9 cut(s) | 231, 366, 1421, 2022, 2063, 2238, 2423, 3698, 3974 |
| HgaI | GACGC | 1 cut(s) | 120 |
| HhaI | GCGC | 4 cut(s) | 116, 118, 164, 4052 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| Hin6I | GCGC | 4 cut(s) | 114, 116, 162, 4050 |
| HinP1I | GCGC | 4 cut(s) | 114, 116, 162, 4050 |
| HpaII | CCGG | 9 cut(s) | 231, 366, 1421, 2022, 2063, 2238, 2423, 3698, 3974 |
| Hpy166II | GTNNAC | 6 cut(s) | 176, 704, 1586, 1636, 2011, 3352 |
| Hpy8I | GTNNAC | 6 cut(s) | 176, 704, 1586, 1636, 2011, 3352 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 743, 1180, 1652, 2027, 2996, 3442 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| HspAI | GCGC | 4 cut(s) | 114, 116, 162, 4050 |
| KasI | GGCGCC | 1 cut(s) | 161 |
| Kpn2I | TCCGGA | 1 cut(s) | 2062 |
| KroI | GCCGGC | 1 cut(s) | 3973 |
| KroNI | GCCGGC | 1 cut(s) | 3975 |
| Ksp22I | TGATCA | 4 cut(s) | 577, 802, 2182, 2680 |
| LmnI | GCTCC | 8 cut(s) | 252, 970, 1532, 2848, 3248, 3744, 3844, 3850 |
| MaeI | CTAG | 5 cut(s) | 102, 842, 1410, 2841, 2895 |
| MfeI | CAATTG | 1 cut(s) | 3342 |
| MflI | RGATCY | 7 cut(s) | 13, 290, 1423, 2368, 2564, 3392, 4025 |
| MhlI | GDGCHC | 7 cut(s) | 28, 42, 178, 1537, 3749, 3905, 4036 |
| Mly113I | GGCGCC | 1 cut(s) | 162 |
| MmeI | TCCRAC | 2 cut(s) | 2652, 3298 |
| Mph1103I | ATGCAT | 4 cut(s) | 514, 739, 996, 2539 |
| MroI | TCCGGA | 1 cut(s) | 2062 |
| MroNI | GCCGGC | 1 cut(s) | 3973 |
| MroXI | GAANNNNTTC | 3 cut(s) | 954, 1346, 2754 |
| MseI | TTAA | 8 cut(s) | 297, 566, 714, 750, 791, 1449, 1506, 2418 |
| MslI | CAYNNNNRTG | 8 cut(s) | 66, 96, 210, 453, 978, 1196, 1365, 2442 |
| MspA1I | CMGCKG | 2 cut(s) | 2180, 2648 |
| MspI | CCGG | 9 cut(s) | 231, 366, 1421, 2022, 2063, 2238, 2423, 3698, 3974 |
| MspR9I | CCNGG | 5 cut(s) | 231, 3072, 3180, 3699, 4030 |
| MunI | CAATTG | 1 cut(s) | 3342 |
| Mva1269I | GAATGC | 2 cut(s) | 439, 1156 |
| MvaI | CCWGG | 3 cut(s) | 3072, 3180, 4030 |
| MvnI | CGCG | 3 cut(s) | 114, 116, 391 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 743, 1180, 1652, 2027, 2996, 3442 |
| NaeI | GCCGGC | 1 cut(s) | 3975 |
| NarI | GGCGCC | 1 cut(s) | 162 |
| NciI | CCSGG | 2 cut(s) | 231, 3699 |
| NcoI | CCATGG | 2 cut(s) | 3055, 3163 |
| NgoMIV | GCCGGC | 1 cut(s) | 3973 |
| NheI | GCTAGC | 1 cut(s) | 1409 |
| NlaIV | GGNNCC | 8 cut(s) | 136, 163, 418, 763, 1534, 1851, 3244, 3540 |
| NmeAIII | GCCGAG | 2 cut(s) | 190, 1407 |
| NmuCI | GTSAC | 9 cut(s) | 47, 502, 538, 592, 727, 1312, 2510, 3693, 3733 |
| NsiI | ATGCAT | 4 cut(s) | 514, 739, 996, 2539 |
| NspI | RCATGY | 3 cut(s) | 1043, 1172, 1199 |
| OliI | CACNNNNGTG | 1 cut(s) | 96 |
| PagI | TCATGA | 2 cut(s) | 2683, 3549 |
| PauI | GCGCGC | 1 cut(s) | 114 |
| PceI | AGGCCT | 1 cut(s) | 3791 |
| PciI | ACATGT | 3 cut(s) | 1039, 1168, 1195 |
| PctI | GAATGC | 2 cut(s) | 439, 1156 |
| PdiI | GCCGGC | 1 cut(s) | 3975 |
| PdmI | GAANNNNTTC | 3 cut(s) | 954, 1346, 2754 |
| PluTI | GGCGCC | 1 cut(s) | 165 |
| PpuMI | RGGWCCY | 1 cut(s) | 2129 |
| PscI | ACATGT | 3 cut(s) | 1039, 1168, 1195 |
| Psp124BI | GAGCTC | 2 cut(s) | 28, 3905 |
| Psp5II | RGGWCCY | 1 cut(s) | 2129 |
| Psp6I | CCWGG | 3 cut(s) | 3070, 3178, 4028 |
| PspEI | GGTNACC | 2 cut(s) | 2425, 2510 |
| PspFI | CCCAGC | 2 cut(s) | 3002, 3110 |
| PspGI | CCWGG | 3 cut(s) | 3070, 3178, 4028 |
| PspN4I | GGNNCC | 8 cut(s) | 136, 163, 418, 763, 1534, 1851, 3244, 3540 |
| PspPI | GGNCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| PspPPI | RGGWCCY | 1 cut(s) | 2129 |
| PstI | CTGCAG | 5 cut(s) | 1543, 1762, 1921, 2137, 3616 |
| PstNI | CAGNNNCTG | 3 cut(s) | 326, 1547, 2372 |
| PsuI | RGATCY | 7 cut(s) | 13, 290, 1423, 2368, 2564, 3392, 4025 |
| PteI | GCGCGC | 1 cut(s) | 114 |
| PvuII | CAGCTG | 1 cut(s) | 2180 |
| RsaI | GTAC | 2 cut(s) | 1167, 3618 |
| RsaNI | GTAC | 2 cut(s) | 1166, 3617 |
| RseI | CAYNNNNRTG | 8 cut(s) | 66, 96, 210, 453, 978, 1196, 1365, 2442 |
| Rsr2I | CGGWCCG | 1 cut(s) | 233 |
| RsrII | CGGWCCG | 1 cut(s) | 233 |
| SacI | GAGCTC | 2 cut(s) | 28, 3905 |
| SaqAI | TTAA | 8 cut(s) | 297, 566, 714, 750, 791, 1449, 1506, 2418 |
| Sau96I | GGNCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| ScrFI | CCNGG | 5 cut(s) | 231, 3072, 3180, 3699, 4030 |
| SduI | GDGCHC | 7 cut(s) | 28, 42, 178, 1537, 3749, 3905, 4036 |
| SfoI | GGCGCC | 1 cut(s) | 163 |
| SinI | GGWCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 66, 96, 210, 453, 978, 1196, 1365, 2442 |
| SmlI | CTYRAG | 2 cut(s) | 2634, 3793 |
| SmoI | CTYRAG | 2 cut(s) | 2634, 3793 |
| SseBI | AGGCCT | 1 cut(s) | 3791 |
| SspDI | GGCGCC | 1 cut(s) | 161 |
| SspI | AATATT | 1 cut(s) | 2755 |
| SspMI | CTAG | 5 cut(s) | 102, 842, 1410, 2841, 2895 |
| SstI | GAGCTC | 2 cut(s) | 28, 3905 |
| StuI | AGGCCT | 1 cut(s) | 3791 |
| StyD4I | CCNGG | 5 cut(s) | 229, 3070, 3178, 3697, 4028 |
| StyI | CCWWGG | 3 cut(s) | 3055, 3163, 3729 |
| TaqI | TCGA | 2 cut(s) | 914, 2229 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TatI | WGTACW | 2 cut(s) | 1165, 3616 |
| TauI | GCSGC | 1 cut(s) | 3243 |
| Tru1I | TTAA | 8 cut(s) | 297, 566, 714, 750, 791, 1449, 1506, 2418 |
| Tru9I | TTAA | 8 cut(s) | 297, 566, 714, 750, 791, 1449, 1506, 2418 |
| TscAI | CASTG | 9 cut(s) | 507, 772, 1381, 1654, 2869, 3754, 3822, 3883, 3903 |
| TseFI | GTSAC | 9 cut(s) | 47, 502, 538, 592, 727, 1312, 2510, 3693, 3733 |
| Tsp45I | GTSAC | 9 cut(s) | 47, 502, 538, 592, 727, 1312, 2510, 3693, 3733 |
| TspGWI | ACGGA | 2 cut(s) | 432, 3822 |
| TspRI | CASTG | 9 cut(s) | 507, 772, 1381, 1654, 2869, 3754, 3822, 3883, 3903 |
| VneI | GTGCAC | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 9 cut(s) | 233, 363, 1685, 2060, 2129, 3052, 3160, 3253, 3881 |
| XapI | RAATTY | 5 cut(s) | 2199, 2356, 2705, 2890, 2913 |
| XbaI | TCTAGA | 1 cut(s) | 841 |
| XceI | RCATGY | 3 cut(s) | 1043, 1172, 1199 |
| XmnI | GAANNNNTTC | 3 cut(s) | 954, 1346, 2754 |
| XspI | CTAG | 5 cut(s) | 102, 842, 1410, 2841, 2895 |
| Zsp2I | ATGCAT | 4 cut(s) | 514, 739, 996, 2539 |