Rorug02G0252300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001352
Physical Location & Seq
Forward (+)
26260844 .. 26262960
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0252300.1

Sequence Viewer

Length: 1500 bp
ATGGGTTGGATTTGGGCAATTGGGTTGCTTGCTATTGTTTATGTACTGCAAGCATGGATTTCCAAAAGCAATAACAAGAAGATCAAAAAATTACCTCCCGGTCCAAGAGGGTTTCCTATTCTCGGAAACCTCCTCATGTTAGGGGAGTTCCCTCATGTCGATCTTCACCGACTAGCCCAAAAGCACGGTGACATCATGCACCTGCGCTTAGGCCTGGTGCCTACCATTGTTGTCTCATCCCCTCAAGCGGCTGAGTTGTTTCTAAAAACGCACGACCTAGCTTTTGCCACGAGGCCACCACATGAAGCTGCAAAGCACATTTCTTATGGCCAAAGGAACTTATCCTATGCCGAGTATGGGTCTTATTGGCGCACCATTCGCAAGATGTGCACCCTTGAATTACTCAGCAACCATAAAATCAATTCTTTCAAGTCCATGAGGAAAGAAGAGCTTGATCTTTTCATTAACTTCATCCGAGAGGCTTCCCACGATCATGCTACTGTTGATCTCAGCGCCAAGGTTTCATCTCTCAATGCAGACATGACGTGCCGAATGGTGTTTGGAAAGAAGTACATGGATAAGGAATTTGATGAGAAGGGTTTCCAGGCTTGGATTCAAGAGGGTATGCATCTAGCAGGCACCCCCAACTTTGGAGATTACCTTCCTTTTCTTGCTCCATTTGACCTCCAGGGTTTAACTAAGCGAATGAAGGCTGTTAGCAAGGTGTTTGATGACTTTTTTGAGAAGATCATTGACGAGCACATCGAATCTCAGGATGATCCAGAAAGGACCAAAGACTTTGTCGATGTCATGTTGGGTTTCATGGGATCGCAAGAATCTGAGTACAAAATTGAACGCTCCAATATCAAAGCCATAATTCTGGACATGGTTGCCGGTGCAATGGACACGTCAGCAACGGCAATTGAGTGGACACTTTCCGAACTCATTAGGCACCCTCGGGTGATGAAGAAAGTCCAGAAAGAGTTAGAAGATGTAGTAGGCATGGAGAGAATGGTGGATGAATCAGACTTGGAGAAGTTAGAGTACTTGAACATGGTGTTGAAGGAAAACATGAGGCTACATCCAGTTGCTCCATTGTTGATCCCCCATGCAGCCATTGAAGACTGCATTGTTAACGGCTTCCACATACCCCAAAAATCGCACGTCATCGTAAATATTTGGGCAGTTGGGAGAGACCCTAGTGCTTGGACTGATCCAGACAGGTTCATACCGGAAAGGTTTGCCGGTAGTAATATAGATCTCCGTGGACGGGACTTCCAACTCCTTCCATTTGGTTCTGGCCGAAGAGGTTGCCCTGGAATGCATCTAGGGCTAACCGTGGTCCTTCTGGTGGTGGCGCAACTTATGCATTGCTTTAATTGGAAACTTCCGGATAATATGTTGCCAAGTGAGTTGGACATGACTGAGGAGTTTGGTCTAACAGTTCCAAGGGCCAAACATCTACTAGCCATTCCTACTTATCGTCTCCGACAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

56.94

Weight (kDa)

6.58

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 487 2.5e-104 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 210
AccB1I GGYRCC 3 cut(s) 217, 638, 951
AccIII TCCGGA 1 cut(s) 1390
AciI CCGC 1 cut(s) 248
AclWI GGATC 4 cut(s) 773, 835, 1096, 1208
AcoI YGGCCR 2 cut(s) 328, 1300
AcsI RAATTY 1 cut(s) 584
AfaI GTAC 4 cut(s) 45, 572, 845, 1046
AfiI CCNNNNNNNGG 6 cut(s) 122, 247, 357, 650, 1270, 1351
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 7 cut(s) 398, 430, 617, 854, 1051, 1063, 1121
AjiI CACGTC 3 cut(s) 546, 909, 1165
AjnI CCWGG 4 cut(s) 213, 603, 687, 1315
AluBI AGCT 3 cut(s) 281, 308, 451
AluI AGCT 3 cut(s) 281, 308, 451
Alw21I GWGCWC 2 cut(s) 392, 762
Alw26I GTCTC 3 cut(s) 238, 1188, 1490
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 4 cut(s) 773, 835, 1096, 1208
Ama87I CYCGRG 1 cut(s) 957
Aor13HI TCCGGA 1 cut(s) 1390
AoxI GGCC 5 cut(s) 211, 293, 328, 1300, 1452
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 308, 1112
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 4 cut(s) 266, 298, 786, 818
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 4 cut(s) 207, 372, 515, 1360
AspS9I GGNCC 4 cut(s) 101, 789, 1342, 1452
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 158, 200, 973
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 3 cut(s) 101, 789, 1342
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 3 cut(s) 217, 638, 951
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 1128
Bbv12I GWGCWC 2 cut(s) 392, 762
BbvI GCAGC 2 cut(s) 295, 1124
BceAI ACGGC 2 cut(s) 933, 1153
BcgI CGANNNNNNTGC 2 cut(s) 1293, 1327
BciT130I CCWGG 4 cut(s) 215, 605, 689, 1317
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 3 cut(s) 238, 1188, 1490
BfaI CTAG 6 cut(s) 173, 278, 632, 1200, 1328, 1466
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 210
BglII AGATCT 1 cut(s) 1258
BisI GCNGC 3 cut(s) 249, 309, 1113
BlsI GCNGC 3 cut(s) 250, 310, 1114
BmcAI AGTACT 1 cut(s) 1046
Bme1390I CCNGG 5 cut(s) 99, 215, 605, 689, 1317
Bme18I GGWCC 3 cut(s) 101, 789, 1342
BmeT110I CYCGRG 1 cut(s) 957
BmgBI CACGTC 3 cut(s) 546, 909, 1165
BmgT120I GGNCC 4 cut(s) 101, 789, 1342, 1452
BmiI GGNNCC 3 cut(s) 219, 640, 953
BmrFI CCNGG 5 cut(s) 99, 215, 605, 689, 1317
BmsI GCATC 2 cut(s) 637, 1333
BpiI GAAGAC 1 cut(s) 1128
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 1188
BsaJI CCNNGG 7 cut(s) 516, 688, 956, 1264, 1315, 1338, 1448
BsaWI WCCGGW 2 cut(s) 1231, 1390
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 247, 357, 650, 1270, 1351
Bse118I RCCGGY 2 cut(s) 893, 1244
Bse1I ACTGG 1 cut(s) 1085
Bse3DI GCAATG 2 cut(s) 906, 1369
BseAI TCCGGA 1 cut(s) 1390
BseBI CCWGG 4 cut(s) 215, 605, 689, 1317
BseDI CCNNGG 7 cut(s) 516, 688, 956, 1264, 1315, 1338, 1448
BseGI GGATG 5 cut(s) 236, 471, 781, 1024, 1081
BseLI CCNNNNNNNGG 6 cut(s) 122, 247, 357, 650, 1270, 1351
BseMI GCAATG 2 cut(s) 906, 1369
BseMII CTCAG 6 cut(s) 243, 418, 523, 785, 831, 1416
BseNI ACTGG 1 cut(s) 1085
BseRI GAGGAG 2 cut(s) 122, 1442
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 2 cut(s) 295, 1124
BshFI GGCC 5 cut(s) 213, 295, 330, 1302, 1454
BshNI GGYRCC 3 cut(s) 217, 638, 951
BsiHKAI GWGCWC 2 cut(s) 392, 762
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 5 cut(s) 99, 894, 1232, 1245, 1391
BslFI GGGAC 1 cut(s) 1286
BslI CCNNNNNNNGG 6 cut(s) 122, 247, 357, 650, 1270, 1351
BsmAI GTCTC 3 cut(s) 238, 1188, 1490
BsmBI CGTCTC 1 cut(s) 1490
BsmFI GGGAC 1 cut(s) 1286
BsmI GAATGC 1 cut(s) 1326
BsnI GGCC 5 cut(s) 213, 295, 330, 1302, 1454
Bso31I GGTCTC 1 cut(s) 1188
BsoBI CYCGRG 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 392, 762
Bsp13I TCCGGA 1 cut(s) 1390
BspACI CCGC 1 cut(s) 248
BspANI GGCC 5 cut(s) 213, 295, 330, 1302, 1454
BspCNI CTCAG 6 cut(s) 244, 417, 522, 784, 832, 1417
BspEI TCCGGA 1 cut(s) 1390
BspLI GGNNCC 3 cut(s) 219, 640, 953
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 4 cut(s) 773, 835, 1096, 1208
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 3 cut(s) 217, 638, 951
BspTNI GGTCTC 1 cut(s) 1188
BsrDI GCAATG 2 cut(s) 906, 1369
BsrFI RCCGGY 2 cut(s) 893, 1244
BsrI ACTGG 1 cut(s) 1085
BssAI RCCGGY 2 cut(s) 893, 1244
BssECI CCNNGG 7 cut(s) 516, 688, 956, 1264, 1315, 1338, 1448
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 516, 1448
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 4 cut(s) 215, 605, 689, 1317
Bst4CI ACNGT 4 cut(s) 188, 502, 1339, 1444
Bst6I CTCTTC 2 cut(s) 441, 1300
BstAPI GCANNNNNTGC 2 cut(s) 387, 1366
BstC8I GCNNGC 3 cut(s) 30, 51, 637
BstDEI CTNAG 8 cut(s) 208, 252, 404, 509, 699, 771, 840, 1425
BstDSI CCRYGG 2 cut(s) 1264, 1338
BstF5I GGATG 5 cut(s) 236, 471, 781, 1024, 1081
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 4 cut(s) 207, 372, 515, 1360
BstMAI GTCTC 3 cut(s) 238, 1188, 1490
BstMWI GCNNNNNNNGC 4 cut(s) 378, 387, 1330, 1366
BstNI CCWGG 4 cut(s) 215, 605, 689, 1317
BstSCI CCNGG 5 cut(s) 97, 213, 603, 687, 1315
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 295, 1124
BstV2I GAAGAC 1 cut(s) 1128
BstX2I RGATCY 1 cut(s) 1258
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 1 cut(s) 1258
BsuRI GGCC 5 cut(s) 213, 295, 330, 1302, 1454
BtgI CCRYGG 2 cut(s) 1264, 1338
BtrI CACGTC 3 cut(s) 546, 909, 1165
BtsCI GGATG 5 cut(s) 236, 471, 781, 1024, 1081
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 30, 51, 637
CfoI GCGC 4 cut(s) 207, 372, 515, 1360
Cfr10I RCCGGY 2 cut(s) 893, 1244
Cfr13I GGNCC 4 cut(s) 101, 789, 1342, 1452
Csp6I GTAC 4 cut(s) 44, 571, 844, 1045
CviQI GTAC 4 cut(s) 44, 571, 844, 1045
DdeI CTNAG 8 cut(s) 208, 252, 404, 509, 699, 771, 840, 1425
EaeI YGGCCR 2 cut(s) 328, 1300
Eam1104I CTCTTC 2 cut(s) 441, 1300
EarI CTCTTC 2 cut(s) 441, 1300
Eco130I CCWWGG 2 cut(s) 516, 1448
Eco147I AGGCCT 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 1188
Eco47I GGWCC 3 cut(s) 101, 789, 1342
Eco88I CYCGRG 1 cut(s) 957
EcoRII CCWGG 4 cut(s) 213, 603, 687, 1315
EcoT14I CCWWGG 2 cut(s) 516, 1448
EcoT22I ATGCAT 3 cut(s) 630, 1326, 1371
ErhI CCWWGG 2 cut(s) 516, 1448
Esp3I CGTCTC 1 cut(s) 1490
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 1286
Fnu4HI GCNGC 3 cut(s) 249, 309, 1113
FokI GGATG 5 cut(s) 223, 458, 788, 1031, 1068
Fsp4HI GCNGC 3 cut(s) 249, 309, 1113
FspBI CTAG 6 cut(s) 173, 278, 632, 1200, 1328, 1466
GlaI GCGC 4 cut(s) 206, 371, 514, 1359
GluI GCNGC 3 cut(s) 249, 309, 1113
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 5 cut(s) 213, 295, 330, 1302, 1454
HapII CCGG 5 cut(s) 99, 894, 1232, 1245, 1391
HhaI GCGC 4 cut(s) 207, 372, 515, 1360
Hin6I GCGC 4 cut(s) 205, 370, 513, 1358
HinP1I GCGC 4 cut(s) 205, 370, 513, 1358
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HinfI GANTC 4 cut(s) 613, 767, 836, 1022
HpaI GTTAAC 1 cut(s) 1135
HpaII CCGG 5 cut(s) 99, 894, 1232, 1245, 1391
HphI GGTGA 3 cut(s) 158, 200, 973
Hpy166II GTNNAC 4 cut(s) 390, 930, 1135, 1268
Hpy188I TCNGA 6 cut(s) 125, 476, 841, 940, 1027, 1490
Hpy188III TCNNGA 7 cut(s) 617, 773, 782, 881, 976, 1217, 1391
Hpy8I GTNNAC 4 cut(s) 390, 930, 1135, 1268
HpyAV CCTTC 6 cut(s) 589, 671, 703, 1057, 1295, 1355
HpyCH4III ACNGT 4 cut(s) 188, 502, 1339, 1444
HpyCH4IV ACGT 3 cut(s) 545, 908, 1164
HpyF10VI GCNNNNNNNGC 4 cut(s) 378, 387, 1330, 1366
HpyF3I CTNAG 8 cut(s) 208, 252, 404, 509, 699, 771, 840, 1425
HpySE526I ACGT 3 cut(s) 545, 908, 1164
HspAI GCGC 4 cut(s) 205, 370, 513, 1358
Kpn2I TCCGGA 1 cut(s) 1390
KspAI GTTAAC 1 cut(s) 1135
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 3 cut(s) 679, 863, 1096
Lsp1109I GCAGC 2 cut(s) 295, 1124
LweI GCATC 2 cut(s) 637, 1333
MaeI CTAG 6 cut(s) 173, 278, 632, 1200, 1328, 1466
MaeII ACGT 3 cut(s) 545, 908, 1164
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 8 cut(s) 91, 155, 458, 757, 979, 1001, 1133, 1317
MfeI CAATTG 2 cut(s) 18, 921
MflI RGATCY 1 cut(s) 1258
MhlI GDGCHC 2 cut(s) 392, 762
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 9 cut(s) 18, 89, 398, 421, 584, 849, 876, 921, 1378
MluNI TGGCCA 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 1303, 1395
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 3 cut(s) 630, 1326, 1371
MroI TCCGGA 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 599
MscI TGGCCA 1 cut(s) 330
MseI TTAA 4 cut(s) 465, 695, 1134, 1377
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 5 cut(s) 99, 894, 1232, 1245, 1391
MspR9I CCNGG 5 cut(s) 99, 215, 605, 689, 1317
MunI CAATTG 2 cut(s) 18, 921
Mva1269I GAATGC 1 cut(s) 1326
MvaI CCWGG 4 cut(s) 215, 605, 689, 1317
MwoI GCNNNNNNNGC 4 cut(s) 378, 387, 1330, 1366
NciI CCSGG 1 cut(s) 99
NlaIV GGNNCC 3 cut(s) 219, 640, 953
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 3 cut(s) 630, 1326, 1371
PaqCI CACCTGC 1 cut(s) 210
PceI AGGCCT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 1326
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 4 cut(s) 613, 767, 836, 1022
PflFI GACNNNGTC 1 cut(s) 800
PkrI GCNGC 3 cut(s) 250, 310, 1114
Psp6I CCWGG 4 cut(s) 213, 603, 687, 1315
PspGI CCWGG 4 cut(s) 213, 603, 687, 1315
PspN4I GGNNCC 3 cut(s) 219, 640, 953
PspPI GGNCC 4 cut(s) 101, 789, 1342, 1452
PsuI RGATCY 1 cut(s) 1258
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 4 cut(s) 45, 572, 845, 1046
RsaNI GTAC 4 cut(s) 44, 571, 844, 1045
RseI CAYNNNNRTG 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 4 cut(s) 465, 695, 1134, 1377
SatI GCNGC 3 cut(s) 249, 309, 1113
Sau96I GGNCC 4 cut(s) 101, 789, 1342, 1452
ScaI AGTACT 1 cut(s) 1046
ScrFI CCNGG 5 cut(s) 99, 215, 605, 689, 1317
SduI GDGCHC 2 cut(s) 392, 762
SfaNI GCATC 2 cut(s) 637, 1333
SinI GGWCC 3 cut(s) 101, 789, 1342
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 9 cut(s) 18, 89, 398, 421, 584, 849, 876, 921, 1378
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 1177
SspMI CTAG 6 cut(s) 173, 278, 632, 1200, 1328, 1466
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 5 cut(s) 97, 213, 603, 687, 1315
StyI CCWWGG 2 cut(s) 516, 1448
TaaI ACNGT 4 cut(s) 188, 502, 1339, 1444
TaiI ACGT 3 cut(s) 548, 911, 1167
TaqI TCGA 3 cut(s) 159, 765, 804
TasI AATT 9 cut(s) 18, 89, 398, 421, 584, 849, 876, 921, 1378
TatI WGTACW 4 cut(s) 43, 570, 843, 1044
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 4 cut(s) 613, 767, 836, 1022
Tru1I TTAA 4 cut(s) 465, 695, 1134, 1377
Tru9I TTAA 4 cut(s) 465, 695, 1134, 1377
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 308, 1112
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 9 cut(s) 318, 451, 460, 513, 722, 811, 980, 1035, 1216
TspGWI ACGGA 1 cut(s) 1253
Tth111I GACNNNGTC 1 cut(s) 800
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 3 cut(s) 101, 789, 1342
XapI RAATTY 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 6 cut(s) 173, 278, 632, 1200, 1328, 1466
ZrmI AGTACT 1 cut(s) 1046
Zsp2I ATGCAT 3 cut(s) 630, 1326, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.