Rh2DG338600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
43747356 .. 43750195
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG338600.1

Sequence Viewer

Length: 372 bp
ATGAAACGAGGAGAAGATGTCAAGATGCTCAGGCTGATGATTCCTTTCTTAGCCCAATGTTCTGGACATTATCCACAAGGATCCGCGAGACGTGGCTGCATCAGAATATTCATGTACCTGTTACTAAGATATATCGATATGTATTGCCTTCGCGACCTGAACGACGTCATTGAGGCTTTCAAGTCAAGTCGAGCAAATCCAGAAAATAAGTTAAAGCAAAATATTGTACCAACTAAAGAAGAAGGGATTGCTGCCCCCATGTACGTCTTAAAACTAGAAGAGAAAAGAGAACGTGGAGATATGGAACTTGACGAATCCAGAGAAAGAAAGAAAATATGTGAAATGTTAATTTCTGCCTCACAGCCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.37

Weight (kDa)

8.93

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccII CGCG 2 cut(s) 86, 153
AciI CCGC 1 cut(s) 84
AclWI GGATC 2 cut(s) 75, 88
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 116, 228, 263
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 75, 88
ApeKI GCWGC 2 cut(s) 96, 251
BamHI GGATCC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 83, 238
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 97, 252
BlsI GCNGC 2 cut(s) 98, 253
BmgBI CACGTC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 2 cut(s) 15, 108
Bpu10I CCTNAGC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 165
BsaXI ACNNNNNCTCC 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 135
BseMII CTCAG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 83, 238
Bsh1236I CGCG 2 cut(s) 86, 153
BshVI ATCGAT 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 80
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 135
BspFNI CGCG 2 cut(s) 86, 153
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 75, 88
BssMI GATC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 29, 49, 125
BstFNI CGCG 2 cut(s) 86, 153
BstKTI GATC 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 80
BstUI CGCG 2 cut(s) 86, 153
BstV1I GCAGC 2 cut(s) 83, 238
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtrI CACGTC 1 cut(s) 92
BtuMI TCGCGA 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 3 cut(s) 115, 227, 262
CviAII CATG 2 cut(s) 112, 259
CviJI RGCY 5 cut(s) 34, 53, 96, 176, 364
CviKI_1 RGCY 5 cut(s) 34, 53, 96, 176, 364
CviQI GTAC 3 cut(s) 115, 227, 262
DdeI CTNAG 3 cut(s) 29, 49, 125
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 2 cut(s) 115, 262
FaiI YATR 6 cut(s) 113, 132, 140, 260, 302, 337
FatI CATG 2 cut(s) 111, 258
Fnu4HI GCNGC 2 cut(s) 97, 252
Fsp4HI GCNGC 2 cut(s) 97, 252
FspBI CTAG 1 cut(s) 275
GluI GCNGC 2 cut(s) 97, 252
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 115, 262
HinfI GANTC 2 cut(s) 40, 314
Hpy188I TCNGA 2 cut(s) 104, 371
Hpy188III TCNNGA 5 cut(s) 22, 63, 152, 200, 318
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 158, 236
HpyCH4IV ACGT 4 cut(s) 91, 165, 264, 292
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 3 cut(s) 29, 49, 125
HpySE526I ACGT 4 cut(s) 91, 165, 264, 292
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 115, 262
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 16, 48, 131, 170, 213, 331
Lsp1109I GCAGC 2 cut(s) 83, 238
LweI GCATC 2 cut(s) 15, 108
MaeI CTAG 1 cut(s) 275
MaeII ACGT 4 cut(s) 91, 165, 264, 292
MaeIII GTNAC 1 cut(s) 120
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 3 cut(s) 26, 251, 290
MflI RGATCY 1 cut(s) 80
MluCI AATT 1 cut(s) 348
MnlI CCTC 2 cut(s) 166, 367
MseI TTAA 3 cut(s) 212, 269, 347
MvnI CGCG 2 cut(s) 86, 153
NdeII GATC 1 cut(s) 80
NlaIII CATG 2 cut(s) 115, 262
NlaIV GGNNCC 1 cut(s) 82
NruI TCGCGA 1 cut(s) 153
PfeI GAWTC 2 cut(s) 40, 314
PkrI GCNGC 2 cut(s) 98, 253
PspN4I GGNNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 80
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 3 cut(s) 116, 228, 263
RsaNI GTAC 3 cut(s) 115, 227, 262
SaqAI TTAA 3 cut(s) 212, 269, 347
SatI GCNGC 2 cut(s) 97, 252
Sau3AI GATC 1 cut(s) 80
SetI ASST 6 cut(s) 94, 120, 159, 168, 267, 295
SfaNI GCATC 2 cut(s) 15, 108
Sse9I AATT 1 cut(s) 348
SsiI CCGC 1 cut(s) 84
SspI AATATT 2 cut(s) 108, 223
SspMI CTAG 1 cut(s) 275
TaiI ACGT 4 cut(s) 94, 168, 267, 295
TaqI TCGA 2 cut(s) 135, 190
TasI AATT 1 cut(s) 348
TfiI GAWTC 2 cut(s) 40, 314
Tru1I TTAA 3 cut(s) 212, 269, 347
Tru9I TTAA 3 cut(s) 212, 269, 347
TseI GCWGC 2 cut(s) 96, 251
TspDTI ATGAA 2 cut(s) 17, 100
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.