Rorug02G0252400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
26353775 .. 26354194
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0252400.1

Sequence Viewer

Length: 420 bp
ATGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGTAGGCTTGCTTCACTTTGTATTATTTATGCAAAACAAAGTTACATGTGTGTATCCACCCTCTAATAATCAACTGTGCTACAAATTTCAGAGAGCTATTTTTTGTTTGTTAGTTTGGAAGAATGTGTTAGCTGTCATTATTTTCTTTGAAATTGAGAACTCCCCTTGTTTTCTTACTAGAGTTTTATACAAGTTGAATTTGTTAAGTTTGGGTATTGATTTTGGTGGTTCAGTTTTCAGCAATTGGTTGGTTAAGATTTTTCTATATTGCTTTTGCCTTGTTATATTTCGCTTTATTGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

9.62

Isoelectric Point (pI)

15.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 197, 310
AfaI GTAC 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 19, 263, 310
AluBI AGCT 3 cut(s) 11, 209, 245
AluI AGCT 3 cut(s) 11, 209, 245
ApeKI GCWGC 2 cut(s) 8, 56
ApoI RAATTY 2 cut(s) 197, 310
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BbvI GCAGC 2 cut(s) 20, 43
BciVI GTATCC 1 cut(s) 177
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 9, 57
BlsI GCNGC 2 cut(s) 10, 58
BseXI GCAGC 2 cut(s) 20, 43
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 54, 122
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 20, 43
BsuI GTATCC 1 cut(s) 177
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 54, 122
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 159
CviJI RGCY 6 cut(s) 11, 56, 92, 120, 209, 245
CviKI_1 RGCY 6 cut(s) 11, 56, 92, 120, 209, 245
CviQI GTAC 1 cut(s) 63
FaeI CATG 1 cut(s) 162
FaiI YATR 7 cut(s) 87, 89, 143, 160, 301, 379, 398
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 158
FauNDI CATATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 9, 57
Fsp4HI GCNGC 2 cut(s) 9, 57
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 9, 57
Hin1II CATG 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 59, 110, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 162
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 33, 38, 45, 85, 399
Lsp1109I GCAGC 2 cut(s) 20, 43
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 1 cut(s) 244
MfeI CAATTG 1 cut(s) 355
MluCI AATT 4 cut(s) 197, 264, 310, 355
MnlI CCTC 1 cut(s) 184
MseI TTAA 2 cut(s) 317, 366
MunI CAATTG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeI CATATG 1 cut(s) 87
NlaIII CATG 1 cut(s) 162
NspI RCATGY 1 cut(s) 162
PciI ACATGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 10, 58
PscI ACATGT 1 cut(s) 158
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 317, 366
SatI GCNGC 2 cut(s) 9, 57
SetI ASST 6 cut(s) 13, 39, 64, 117, 211, 247
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 4 cut(s) 197, 264, 310, 355
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 189
TasI AATT 4 cut(s) 197, 264, 310, 355
Tru1I TTAA 2 cut(s) 317, 366
Tru9I TTAA 2 cut(s) 317, 366
TseI GCWGC 2 cut(s) 8, 56
XapI RAATTY 2 cut(s) 197, 310
XceI RCATGY 1 cut(s) 162
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.