Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Forward (+)

10996165 .. 10997830

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG062500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTACGAGGTCCTAAAATATATCGTTGAATATTGCCTTAGCGACCTGAACGACGTGGGGACGTTGCTCCACGCCATTGAGACTGTCAAGTCAAGTCCAGCAAATAATCCGGAAAAGGTGCGGCTGGCAAATGATCTGGAAAAGCGCAGGGGTCAATCCGGTATGCCTCAGCCTCCACCAGGGCCACCACCACATGGGCAAACACCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

70

Amino Acids

7.72

Weight (kDa)

6.03

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	179, 194
AgsI	TTSAA	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	10, 182
AvaII	GGWCC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	74
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	10, 182
BmrFI	CCNGG	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	38, 168
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	2 cut(s)	109, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 194
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	179, 194
BseMII	CTCAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	110, 159
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	179, 194
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	184
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	38, 168
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	10, 182
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	3 cut(s)	124, 172, 184
CviKI_1	RGCY	3 cut(s)	124, 172, 184
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	38, 168
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	197
FaiI	YATR	3 cut(s)	21, 164, 195
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	110, 159
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	110, 159
Hpy188III	TCNNGA	2 cut(s)	110, 137
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	54, 62
HpyF3I	CTNAG	2 cut(s)	38, 168
HpySE526I	ACGT	2 cut(s)	54, 62
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	59, 110, 111, 122, 123, 133, 165, 172, 192
MaeII	ACGT	2 cut(s)	54, 62
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	177, 183
MroI	TCCGGA	1 cut(s)	109
MspI	CCGG	2 cut(s)	110, 159
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	10, 182
PspPPI	RGGWCCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	10, 182
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	6 cut(s)	12, 48, 57, 65, 120, 208
SinI	GGWCC	1 cut(s)	10
SsiI	CCGC	1 cut(s)	121
SspI	AATATT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	57, 65
TauI	GCSGC	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	10
XagI	CCTNNNNNAGG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.