Rmu_co8370959.1_g000001

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8370959.1
OG0001352
Physical Location & Seq
Reverse (-)
2 .. 238
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8370959.1_g000001.1.cds

Sequence Viewer

Length: 237 bp
atgaagaagaccgatgtgactgacagcatgattgagagctgcttaacatctgttgatcaggaagctgaagtgacaggaattacagcaactaatctggataggaacatcagttcagagactacttctatttcagatggtagaactgaagaatcaaaactgcttcttggtgatagcaatggtttacaccccattaaatatgaaatggtgacagatgcatcagaagctattaaaaagact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.55

Weight (kDa)

4.46

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 87, 165
AloI GAACNNNNNNTCC 2 cut(s) 94, 126
AluBI AGCT 3 cut(s) 39, 65, 224
AluI AGCT 3 cut(s) 39, 65, 224
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 179, 217
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 110
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmsI GCATC 2 cut(s) 202, 224
BpiI GAAGAC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 181
BssMI GATC 1 cut(s) 55
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 14
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 39, 65, 224
CviKI_1 RGCY 3 cut(s) 39, 65, 224
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 87, 165
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 198
FatI CATG 1 cut(s) 27
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 179, 217
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 115, 133, 220
Hpy188III TCNNGA 2 cut(s) 59, 95
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 44, 60, 80
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 202, 224
MaeIII GTNAC 3 cut(s) 16, 70, 205
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 16, 19, 158
MluCI AATT 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 44, 192, 228
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 16, 70, 205
NsiI ATGCAT 1 cut(s) 217
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 44, 192, 228
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 55
SetI ASST 3 cut(s) 41, 67, 226
SfaNI GCATC 2 cut(s) 202, 224
SgeI CNNG 5 cut(s) 40, 71, 87, 107, 176
Sse9I AATT 1 cut(s) 78
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 78
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 44, 192, 228
Tru9I TTAA 3 cut(s) 44, 192, 228
TseFI GTSAC 3 cut(s) 16, 70, 205
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 3 cut(s) 16, 70, 205
TspDTI ATGAA 2 cut(s) 17, 213
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.