Rh2AG342600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001352
Physical Location & Seq
Forward (+)
50156160 .. 50168107
11948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG342600.1

Sequence Viewer

Length: 465 bp
ATGAAGAAGCCGAAGAAGCCAGCGGTGAAGGAGGATGAATTCGAGATGATGTCTGGGGATGAGGAGGAGGAGGAGGAGACGCTGTTGGAGGAGGGGGAAGAAGAACCGACAGAAGAAGACCGGAAGGTGTGGTTGGTACTTTGCAGGAGACTGGGATTCCTTATGAAACCAGGAGAAGATATCAAGTTGATGATTTCTTTCTTAGCCCAGTATTCTGGACTTTTTCGACTAAAAGGATCCTCGAGGTGTGGCTGCATCAGAATATTCATGTACCAGTTCCTAAAATATATCGATGAATATTGCCTTAGCGACCTGAACGACGTGGGGATGTTGCTCGACGTCATTGAGGCTGTCAAGTCAAGTCCAGCAAATCCAGAAAATAAGTTAAAGAAGAAAATCGTACCAAGTAAAGAAGAAGGGATTGCTGCCCCCATGTACCTCTCAAATCTAGAAGAGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.8

Weight (kDa)

4.85

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AbsI CCTCGAGG 1 cut(s) 241
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 231, 244
AcsI RAATTY 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 4 cut(s) 138, 272, 402, 437
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
Alw26I GTCTC 2 cut(s) 71, 142
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 252, 425
ApoI RAATTY 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 241
BamHI GGATCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 239, 412
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 71, 142
BfaI CTAG 1 cut(s) 449
BisI GCNGC 2 cut(s) 253, 426
BlsI GCNGC 2 cut(s) 254, 427
Bme1390I CCNGG 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 2 cut(s) 161, 202
BmsI GCATC 1 cut(s) 264
BmuI ACTGGG 2 cut(s) 161, 202
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse1I ACTGG 3 cut(s) 156, 208, 274
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 291
BseGI GGATG 3 cut(s) 40, 64, 333
BseNI ACTGG 3 cut(s) 156, 208, 274
BseRI GAGGAG 6 cut(s) 77, 80, 83, 86, 89, 104
BseXI GCAGC 2 cut(s) 239, 412
BshVI ATCGAT 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 71, 142
BsmBI CGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 2 cut(s) 231, 244
BsrI ACTGG 3 cut(s) 156, 208, 274
BssMI GATC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 202, 305
BstF5I GGATG 3 cut(s) 40, 64, 333
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 2 cut(s) 71, 142
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 239, 412
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 291
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 3 cut(s) 40, 64, 333
Cac8I GCNNGC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 88
Csp6I GTAC 4 cut(s) 137, 271, 401, 436
CviAII CATG 2 cut(s) 268, 433
CviJI RGCY 5 cut(s) 10, 19, 206, 252, 350
CviKI_1 RGCY 5 cut(s) 10, 19, 206, 252, 350
CviQI GTAC 4 cut(s) 137, 271, 401, 436
DdeI CTNAG 2 cut(s) 202, 305
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 271, 436
FaiI YATR 4 cut(s) 164, 269, 288, 434
FatI CATG 2 cut(s) 267, 432
Fnu4HI GCNGC 2 cut(s) 253, 426
FokI GGATG 3 cut(s) 47, 71, 340
Fsp4HI GCNGC 2 cut(s) 253, 426
FspBI CTAG 1 cut(s) 449
GluI GCNGC 2 cut(s) 253, 426
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 271, 436
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 4 cut(s) 43, 216, 374, 449
Hpy99I CGWCG 2 cut(s) 323, 341
HpyAV CCTTC 3 cut(s) 22, 118, 410
HpyCH4IV ACGT 2 cut(s) 321, 339
HpyCH4V TGCA 2 cut(s) 144, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 202, 305
HpySE526I ACGT 2 cut(s) 321, 339
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 271, 436
Kzo9I GATC 1 cut(s) 236
Lsp1109I GCAGC 2 cut(s) 239, 412
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 321, 339
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MflI RGATCY 1 cut(s) 236
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 66
MseI TTAA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 236
NlaIII CATG 2 cut(s) 271, 436
NlaIV GGNNCC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 241
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 254, 427
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 238
PspXI VCTCGAGB 1 cut(s) 241
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 4 cut(s) 138, 272, 402, 437
RsaNI GTAC 4 cut(s) 137, 271, 401, 436
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 253, 426
Sau3AI GATC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 171
SetI ASST 7 cut(s) 129, 248, 315, 324, 342, 441, 464
SfaNI GCATC 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 1 cut(s) 38
SsiI CCGC 1 cut(s) 23
SspI AATATT 2 cut(s) 264, 299
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 169
TaiI ACGT 2 cut(s) 324, 342
TaqI TCGA 5 cut(s) 42, 226, 242, 291, 336
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseI GCWGC 2 cut(s) 252, 425
TspDTI ATGAA 5 cut(s) 17, 51, 179, 256, 309
XapI RAATTY 1 cut(s) 38
XbaI TCTAGA 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 241
XspI CTAG 1 cut(s) 449
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.