Rroxscaffold_2G00118810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001352
Physical Location & Seq
Forward (+)
50685253 .. 50687334
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118810.1

Sequence Viewer

Length: 732 bp
ATGAAGGAGCGGAAGAAGCCGGAGGTGAAGGAGGATGAATTCGAGATGATGTCGGGGGATGAGGAGGAGGAGGAGGAGGAGACGCTATTGGAGGAGGGGGAAGAAGAACCGACAGAAGAAGACAGGAAGGTGTGGTCGTACCTTTCTAGTAGACTGGGATTCAGAATGAATCCAGGAGAAGATGTCAAGATCGTCAGGCTGATGATTCCTTTCTTAGCCCAATGTTCTGGACCTCTTCCACCAGAAGGATCCGCGAGATGTGTCTACATCAAAATGTTCATGCACCAGTTCCAAACATATATCTATAAATATTGCCTTAGCGACCTGAACGACGTGGAGATGCTGCTCAATGTCATTGAGGCTGTCGAGTCAAGTCCAGCAAATCCAGAAAATAAGGCTGGTCAACGCTCATCATGGCCGGTCAACGCCAATCTGGACCGGTCAATGCCGAACAAAGCCGATCAATGCTTGGTCAACGCCTACAAGAGATTTGCTCTGGACACCCTTTGGCATTCTTCAGTCATCAGCGGCCCGCTGAACTATATACCGCTACCTCCTGCGGCGATCACAGCTCGCTGCCACCTTCACGACACTCCGCCAAAGCATAACAGCACCACTGCCAGTCGAAAGTGTCATCAACTACTAGCCGCAGCAGCCTCCGCCAAGGACAGTCCGCCAATGGCACCGCTAGGGAGTACCTCCTCCAGCGGCAACGCCGGCTTCCTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.19

Weight (kDa)

5.17

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccBSI CCGCTC 1 cut(s) 10
AccI GTMKAC 2 cut(s) 151, 264
AccII CGCG 1 cut(s) 254
AclWI GGATC 2 cut(s) 243, 256
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 2 cut(s) 140, 697
AfiI CCNNNNNNNGG 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 438
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 572
AluI AGCT 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 243, 256
AoxI GGCC 2 cut(s) 416, 529
ApeKI GCWGC 4 cut(s) 343, 576, 650, 653
ApoI RAATTY 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 230, 436, 530
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 2 cut(s) 230, 436
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 330, 563, 662, 665
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 4 cut(s) 147, 644, 689, 730
BisI GCNGC 8 cut(s) 344, 529, 561, 577, 648, 651, 654, 709
BlsI GCNGC 8 cut(s) 345, 530, 562, 578, 649, 652, 655, 710
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 230, 436
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 3 cut(s) 230, 436, 530
BmiI GGNNCC 2 cut(s) 250, 684
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 663
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 3 cut(s) 418, 438, 716
Bse1I ACTGG 3 cut(s) 159, 286, 621
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 2 cut(s) 40, 64
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 3 cut(s) 159, 286, 621
BseRI GAGGAG 8 cut(s) 77, 80, 83, 86, 89, 92, 107, 691
BseXI GCAGC 4 cut(s) 330, 563, 662, 665
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 2 cut(s) 418, 531
BshNI GGYRCC 1 cut(s) 682
BshTI ACCGGT 1 cut(s) 438
BsiSI CCGG 4 cut(s) 20, 419, 439, 717
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 418, 531
Bsp143I GATC 4 cut(s) 189, 248, 460, 564
BspANI GGCC 2 cut(s) 418, 531
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 250, 684
BspPI GGATC 2 cut(s) 243, 256
BspT107I GGYRCC 1 cut(s) 682
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 3 cut(s) 418, 438, 716
BsrI ACTGG 3 cut(s) 159, 286, 621
BssAI RCCGGY 3 cut(s) 418, 438, 716
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 4 cut(s) 189, 248, 460, 564
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 533, 574, 718
BstDEI CTNAG 2 cut(s) 214, 317
BstF5I GGATG 2 cut(s) 40, 64
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 4 cut(s) 192, 251, 463, 567
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 189, 248, 460, 564
BstMWI GCNNNNNNNGC 6 cut(s) 16, 569, 653, 659, 717, 726
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 330, 563, 662, 665
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 2 cut(s) 418, 531
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 2 cut(s) 40, 64
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 3 cut(s) 533, 574, 718
Cfr10I RCCGGY 3 cut(s) 418, 438, 716
Cfr13I GGNCC 3 cut(s) 230, 436, 530
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 139, 696
CspAI ACCGGT 1 cut(s) 438
CviAII CATG 2 cut(s) 280, 414
CviQI GTAC 2 cut(s) 139, 696
DdeI CTNAG 2 cut(s) 214, 317
DpnI GATC 4 cut(s) 191, 250, 462, 566
DpnII GATC 4 cut(s) 189, 248, 460, 564
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 3 cut(s) 585, 649, 663
Eco130I CCWWGG 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 230, 436
Eco57I CTGAAG 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 2 cut(s) 283, 417
FaiI YATR 8 cut(s) 281, 298, 300, 306, 415, 543, 545, 606
FatI CATG 2 cut(s) 279, 413
FauI CCCGC 1 cut(s) 540
FblI GTMKAC 2 cut(s) 151, 264
Fnu4HI GCNGC 8 cut(s) 344, 529, 561, 577, 648, 651, 654, 709
FokI GGATG 2 cut(s) 47, 71
Fsp4HI GCNGC 8 cut(s) 344, 529, 561, 577, 648, 651, 654, 709
FspBI CTAG 4 cut(s) 147, 644, 689, 730
GluI GCNGC 8 cut(s) 344, 529, 561, 577, 648, 651, 654, 709
GsuI CTGGAG 1 cut(s) 688
HaeIII GGCC 2 cut(s) 418, 531
HapII CCGG 4 cut(s) 20, 419, 439, 717
HgaI GACGC 1 cut(s) 91
Hin1II CATG 2 cut(s) 283, 417
HincII GTYRAC 3 cut(s) 404, 424, 475
HindII GTYRAC 3 cut(s) 404, 424, 475
HinfI GANTC 4 cut(s) 159, 169, 205, 368
HpaII CCGG 4 cut(s) 20, 419, 439, 717
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 5 cut(s) 152, 265, 404, 424, 475
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 7 cut(s) 43, 187, 228, 386, 434, 497, 587
Hpy8I GTNNAC 5 cut(s) 152, 265, 404, 424, 475
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 22, 121, 239, 593
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 569, 653, 659, 717, 726
HpyF3I CTNAG 2 cut(s) 214, 317
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 2 cut(s) 283, 417
KroI GCCGGC 1 cut(s) 716
KroNI GCCGGC 1 cut(s) 718
Kzo9I GATC 4 cut(s) 189, 248, 460, 564
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 4 cut(s) 330, 563, 662, 665
LweI GCATC 1 cut(s) 330
MaeI CTAG 4 cut(s) 147, 644, 689, 730
MaeII ACGT 1 cut(s) 333
MalI GATC 4 cut(s) 191, 250, 462, 566
MbiI CCGCTC 1 cut(s) 10
MboI GATC 4 cut(s) 189, 248, 460, 564
MboII GAAGA 8 cut(s) 25, 113, 116, 128, 131, 191, 227, 507
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 716
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 3 cut(s) 528, 535, 708
MspI CCGG 4 cut(s) 20, 419, 439, 717
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 6 cut(s) 16, 569, 653, 659, 717, 726
NaeI GCCGGC 1 cut(s) 718
NdeII GATC 4 cut(s) 189, 248, 460, 564
NgoMIV GCCGGC 1 cut(s) 716
NlaIII CATG 2 cut(s) 283, 417
NlaIV GGNNCC 2 cut(s) 250, 684
PctI GAATGC 1 cut(s) 511
PdiI GCCGGC 1 cut(s) 718
PfeI GAWTC 3 cut(s) 159, 169, 205
PfoI TCCNGGA 1 cut(s) 172
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 8 cut(s) 345, 530, 562, 578, 649, 652, 655, 710
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 250, 684
PspPI GGNCC 3 cut(s) 230, 436, 530
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 140, 697
RsaNI GTAC 2 cut(s) 139, 696
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 8 cut(s) 344, 529, 561, 577, 648, 651, 654, 709
Sau3AI GATC 4 cut(s) 189, 248, 460, 564
Sau96I GGNCC 3 cut(s) 230, 436, 530
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 174
SfaNI GCATC 1 cut(s) 330
SinI GGWCC 2 cut(s) 230, 436
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 38
SspI AATATT 1 cut(s) 311
SspMI CTAG 4 cut(s) 147, 644, 689, 730
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 671
TaiI ACGT 1 cut(s) 336
TaqI TCGA 3 cut(s) 42, 366, 625
TasI AATT 1 cut(s) 38
TauI GCSGC 4 cut(s) 531, 563, 650, 711
TfiI GAWTC 3 cut(s) 159, 169, 205
TscAI CASTG 1 cut(s) 622
TseI GCWGC 4 cut(s) 343, 576, 650, 653
TspDTI ATGAA 4 cut(s) 17, 51, 182, 268
TspRI CASTG 1 cut(s) 622
VpaK11BI GGWCC 2 cut(s) 230, 436
XapI RAATTY 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 151, 264
XspI CTAG 4 cut(s) 147, 644, 689, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.