Rh2BG337000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001352
Physical Location & Seq
Forward (+)
44511708 .. 44514007
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG337000.1

Sequence Viewer

Length: 654 bp
ATGGAGGGCAAAGACCTGTTTTTGAAGCTGGCACAATACCGGGTGCGGGTCAATCTTAACGATTCTGATCGGCAAAAGGCTGAGGAACGTACCCACCTCTTCATCAAAAGATTCCCTGAGTGGCAACGGAAAGCGATAATCCTTGGCATCGTCAGGACTACGAGAAGCCTCCTTAGACCTAGGTATATAGATGAGGAGCTTATTCGAAAATTTATTGAAAAAATGAAGGAGTGGAAGAAGCTGGTGGTGAAGGATGATGATTTCGAGATGATGTCGGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGACGCTGTTGGAGGAGGGGGAAGAAGAACCGACAGAACAAGACAGGAGGGTGTGGTCGTACCTTTCCAGTAGCCTGGGATTCAGAATGAAGCCAGGAGAAGATGTCAAGATCGTCAGGCTGATGATTCCTTTCTTAGCCCAATGTTGTGGACGTCTTCCACCAGAAGGACCCGCGAGATGTGTCCACATCAAAATGTTCATACACCAGTTCCAAACATATATCATTAAATATTGCCTTAGCGACCTGAACGACGTGGAGATGCTGCTCGATGTCATTAAGGCTGTCGAGTCAAGTCCAGCAAATCCAGAAAATAAGGTGCGGCTGGGTAGATCTTTAATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

25.69

Weight (kDa)

5.38

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 463
AccII CGCG 1 cut(s) 482
AciI CCGC 3 cut(s) 46, 480, 628
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 2 cut(s) 91, 368
AfiI CCNNNNNNNGG 2 cut(s) 46, 473
AgsI TTSAA 2 cut(s) 25, 218
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 2 cut(s) 381, 400
AluBI AGCT 3 cut(s) 28, 199, 241
AluI AGCT 3 cut(s) 28, 199, 241
Alw26I GTCTC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 1 cut(s) 209
AspA2I CCTAGG 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 476
AvrII CCTAGG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 558
BciT130I CCWGG 2 cut(s) 383, 402
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 180
BglII AGATCT 1 cut(s) 638
BisI GCNGC 2 cut(s) 572, 629
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 2 cut(s) 573, 630
Bme1390I CCNGG 3 cut(s) 41, 383, 402
Bme18I GGWCC 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 3 cut(s) 41, 383, 402
BmsI GCATC 2 cut(s) 156, 558
BpiI GAAGAC 1 cut(s) 455
Bpu10I CCTNAGC 2 cut(s) 81, 545
Bpu14I TTCGAA 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 142, 179, 382
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 473
Bse1I ACTGG 2 cut(s) 375, 514
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 2 cut(s) 383, 402
BseDI CCNNGG 3 cut(s) 142, 179, 382
BseGI GGATG 2 cut(s) 259, 286
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 46, 473
BseMII CTCAG 2 cut(s) 72, 108
BseNI ACTGG 2 cut(s) 375, 514
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 482
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 46, 473
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 67, 417, 638
BspACI CCGC 3 cut(s) 46, 480, 628
BspCNI CTCAG 2 cut(s) 73, 109
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 478
BspT104I TTCGAA 1 cut(s) 205
BsrI ACTGG 2 cut(s) 375, 514
BssECI CCNNGG 3 cut(s) 142, 179, 382
BssMI GATC 3 cut(s) 67, 417, 638
BssNI GRCGYC 1 cut(s) 460
BssT1I CCWWGG 2 cut(s) 142, 179
Bst2UI CCWGG 2 cut(s) 383, 402
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 460
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 81, 117, 173, 442, 545
BstF5I GGATG 2 cut(s) 259, 286
BstFNI CGCG 1 cut(s) 482
BstKTI GATC 3 cut(s) 70, 420, 641
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 67, 417, 638
BstNI CCWGG 2 cut(s) 383, 402
BstSCI CCNGG 3 cut(s) 39, 381, 400
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 558
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 2 cut(s) 382, 455
BstYI RGATCY 1 cut(s) 638
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 259, 286
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 90, 367
CviQI GTAC 2 cut(s) 90, 367
DdeI CTNAG 5 cut(s) 81, 117, 173, 442, 545
DpnI GATC 3 cut(s) 69, 419, 640
DpnII GATC 3 cut(s) 67, 417, 638
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 142, 179
Eco47I GGWCC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 381, 400
EcoT14I CCWWGG 2 cut(s) 142, 179
ErhI CCWWGG 2 cut(s) 142, 179
Esp3I CGTCTC 1 cut(s) 302
FaiI YATR 5 cut(s) 186, 188, 509, 526, 528
FauI CCCGC 2 cut(s) 39, 487
Fnu4HI GCNGC 2 cut(s) 572, 629
FokI GGATG 2 cut(s) 266, 293
Fsp4HI GCNGC 2 cut(s) 572, 629
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 572, 629
GsaI CCCAGC 1 cut(s) 635
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 460
HinfI GANTC 5 cut(s) 62, 111, 387, 433, 596
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 458, 493
Hpy188I TCNGA 2 cut(s) 67, 392
Hpy188III TCNNGA 4 cut(s) 154, 265, 415, 614
Hpy8I GTNNAC 2 cut(s) 458, 493
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 220, 244, 467
HpyCH4IV ACGT 3 cut(s) 88, 460, 561
HpyF3I CTNAG 5 cut(s) 81, 117, 173, 442, 545
HpySE526I ACGT 3 cut(s) 88, 460, 561
Hsp92I GRCGYC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 67, 417, 638
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 2 cut(s) 156, 558
MaeI CTAG 1 cut(s) 180
MaeII ACGT 3 cut(s) 88, 460, 561
MalI GATC 3 cut(s) 69, 419, 640
MboI GATC 3 cut(s) 67, 417, 638
MboII GAAGA 6 cut(s) 91, 247, 341, 344, 419, 455
MflI RGATCY 1 cut(s) 638
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 297
MseI TTAA 4 cut(s) 57, 534, 585, 644
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 3 cut(s) 41, 383, 402
MvaI CCWGG 2 cut(s) 383, 402
MvnI CGCG 1 cut(s) 482
NciI CCSGG 1 cut(s) 41
NdeII GATC 3 cut(s) 67, 417, 638
NlaIV GGNNCC 1 cut(s) 478
NspV TTCGAA 1 cut(s) 205
PfeI GAWTC 4 cut(s) 62, 111, 387, 433
PkrI GCNGC 2 cut(s) 573, 630
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 381, 400
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 2 cut(s) 381, 400
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 1 cut(s) 476
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 91, 368
RsaNI GTAC 2 cut(s) 90, 367
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 4 cut(s) 57, 534, 585, 644
SatI GCNGC 2 cut(s) 572, 629
Sau3AI GATC 3 cut(s) 67, 417, 638
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 3 cut(s) 41, 383, 402
SfaNI GCATC 2 cut(s) 156, 558
SfuI TTCGAA 1 cut(s) 205
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 1 cut(s) 209
SsiI CCGC 3 cut(s) 46, 480, 628
SspI AATATT 1 cut(s) 539
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 3 cut(s) 39, 381, 400
StyI CCWWGG 2 cut(s) 142, 179
TaiI ACGT 3 cut(s) 91, 463, 564
TaqI TCGA 4 cut(s) 205, 264, 576, 594
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 4 cut(s) 62, 111, 387, 433
Tru1I TTAA 4 cut(s) 57, 534, 585, 644
Tru9I TTAA 4 cut(s) 57, 534, 585, 644
TseI GCWGC 1 cut(s) 571
TspDTI ATGAA 4 cut(s) 91, 239, 410, 496
TspGWI ACGGA 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 1 cut(s) 180
ZraI GACGTC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.