Rh5DG312600

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001352
Physical Location & Seq
Reverse (-)
40092355 .. 40092588
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG312600.1

Sequence Viewer

Length: 234 bp
ATGCATGATTGGGAAGCTAGCCTTGGATTGGATGTCAACAGCGGCAAGCCAATGATTACAAGTACGCCTGTTGAAGGTGAAGCCAATATGTCTCAGTCCAAGATCAAGATGTTTAAAAACCAATCCGCAGAAGTAAGTTTTGTGGCAAATCCTATAGCTACAGAAAAGATCAATTGTTCAAGTCTGGACACACTTGCCAATTCAAATAGGTCTGATTTTGCAAGACGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

5.68

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 126
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 28, 74
AgsI TTSAA 3 cut(s) 74, 180, 204
AjiI CACGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 17, 158
AluI AGCT 2 cut(s) 17, 158
Alw26I GTCTC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 153, 159
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmgBI CACGTC 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 74
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 28, 74
BseMII CTCAG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 28, 74
BsmAI GTCTC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 102, 168
BspACI CCGC 2 cut(s) 42, 126
BspCNI CTCAG 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 102, 168
BssT1I CCWWGG 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 19, 47
BstDEI CTNAG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 105, 171
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 102, 168
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSFI CTRYAG 2 cut(s) 153, 159
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 19, 47
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 17, 21, 49, 83, 158
CviKI_1 RGCY 5 cut(s) 17, 21, 49, 83, 158
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 104, 170
DpnII GATC 2 cut(s) 102, 168
DraI TTTAAA 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 8
FaiI YATR 3 cut(s) 6, 89, 155
FalI AAGNNNNNCTT 2 cut(s) 38, 214
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 8
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 106, 185
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 4, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 102, 168
LpnPI CCDG 2 cut(s) 81, 170
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 226
MalI GATC 2 cut(s) 104, 170
MboI GATC 2 cut(s) 102, 168
MfeI CAATTG 1 cut(s) 172
MluCI AATT 2 cut(s) 172, 199
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 42
MunI CAATTG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 102, 168
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 44
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 102, 168
SetI ASST 5 cut(s) 19, 79, 160, 212, 229
SfcI CTRYAG 2 cut(s) 153, 159
Sse9I AATT 2 cut(s) 172, 199
SsiI CCGC 2 cut(s) 42, 126
SspMI CTAG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 1 cut(s) 229
TasI AATT 2 cut(s) 172, 199
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 72
XspI CTAG 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.