Rh2DG368900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
52202887 .. 52207546
4660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG368900.1

Sequence Viewer

Length: 291 bp
ATGAAGAAGCCGAAGAAACCAGCGGTGAAGGAGGATGAATTCGAGATGATGTTGGGGGATGAGGAGGAGGAGGAGACGCTGTTGGAGGAGGGGGAAGAAGAACCGACAGAAGAAGACAGGAAGGTGTGGTTGGTACTTTGCAGGAGACTGGGATTCCTTATGAAACCAGGAGAAGATGTCAACGACCTGAACGACGTGGGGATGTTGCTCGACGTCATTGAGGCTGTCAAGTCAAGTCCAGCAAATCCAGAAAATAAGTTAAATAAGAAAATCGTACCAACTACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

4.53

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AciI CCGC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 135, 276
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 68, 139
ApoI RAATTY 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 68, 139
Bme1390I CCNGG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 213
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 162, 192
Bse1I ACTGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 40, 64, 207
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 5 cut(s) 77, 80, 83, 86, 101
BsmAI GTCTC 2 cut(s) 68, 139
BsmBI CGTCTC 1 cut(s) 68
BspACI CCGC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 213
BstF5I GGATG 3 cut(s) 40, 64, 207
BstMAI GTCTC 2 cut(s) 68, 139
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 120
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 3 cut(s) 40, 64, 207
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 134, 275
CviJI RGCY 2 cut(s) 10, 224
CviKI_1 RGCY 2 cut(s) 10, 224
CviQI GTAC 2 cut(s) 134, 275
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 68
FaiI YATR 1 cut(s) 161
FokI GGATG 3 cut(s) 47, 71, 214
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 153
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 43, 248
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 197, 215
HpyAV CCTTC 2 cut(s) 22, 115
HpyCH4IV ACGT 2 cut(s) 195, 213
HpyCH4V TGCA 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 195, 213
Hsp92I GRCGYC 1 cut(s) 213
LpnPI CCDG 9 cut(s) 33, 103, 127, 134, 153, 180, 200, 252, 261
MaeII ACGT 2 cut(s) 195, 213
MboII GAAGA 7 cut(s) 16, 25, 107, 110, 122, 125, 185
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 25, 55, 58, 61, 64, 79, 82, 214
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
RsaI GTAC 2 cut(s) 135, 276
RsaNI GTAC 2 cut(s) 134, 275
SaqAI TTAA 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 126, 189, 198, 216
Sse9I AATT 1 cut(s) 38
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 166
TaiI ACGT 2 cut(s) 198, 216
TaqI TCGA 2 cut(s) 42, 210
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 17, 51, 176
XapI RAATTY 1 cut(s) 38
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.