endonuclease activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1195, 2248 |
| Acc36I | ACCTGC | 1 cut(s) | 2965 |
| AccB1I | GGYRCC | 3 cut(s) | 107, 227, 2854 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4654 |
| AccII | CGCG | 1 cut(s) | 3820 |
| AccIII | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| AclWI | GGATC | 9 cut(s) | 91, 385, 668, 897, 1829, 2212, 2758, 4301, 4775 |
| AcoI | YGGCCR | 1 cut(s) | 3291 |
| AcvI | CACGTG | 1 cut(s) | 4181 |
| AfaI | GTAC | 3 cut(s) | 633, 2934, 3541 |
| AflIII | ACRYGT | 3 cut(s) | 505, 634, 661 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3918 |
| AjnI | CCWGG | 2 cut(s) | 2536, 3764 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3080, 3112 |
| Alw21I | GWGCWC | 2 cut(s) | 3065, 3221 |
| Alw26I | GTCTC | 9 cut(s) | 853, 947, 1197, 1356, 1572, 3260, 3389, 3717, 4481 |
| AlwI | GGATC | 9 cut(s) | 91, 385, 668, 897, 1829, 2212, 2758, 4301, 4775 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1013, 1838, 4040, 4827 |
| Ama87I | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| Aor13HI | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| AoxI | GGCC | 5 cut(s) | 1019, 3105, 3291, 3767, 4029 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2716, 2748, 3133, 3165 |
| AseI | ATTAAT | 1 cut(s) | 3825 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 812, 2220, 4607 |
| AsuC2I | CCSGG | 3 cut(s) | 80, 81, 3015 |
| AsuII | TTCGAA | 1 cut(s) | 2354 |
| AsuNHI | GCTAGC | 2 cut(s) | 875, 4585 |
| AvaI | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| AvaII | GGWCC | 9 cut(s) | 54, 1151, 1526, 1595, 2518, 2611, 3197, 3717, 3871 |
| AxyI | CCTNAGG | 1 cut(s) | 4820 |
| BanI | GGYRCC | 3 cut(s) | 107, 227, 2854 |
| BanII | GRGCYC | 3 cut(s) | 1003, 3221, 4662 |
| BbrPI | CACGTG | 1 cut(s) | 4181 |
| BbsI | GAAGAC | 3 cut(s) | 168, 2244, 3917 |
| Bbv12I | GWGCWC | 2 cut(s) | 3065, 3221 |
| BceAI | ACGGC | 1 cut(s) | 2614 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2237, 2271 |
| BciT130I | CCWGG | 2 cut(s) | 2538, 3766 |
| BclI | TGATCA | 5 cut(s) | 268, 1648, 1978, 2896, 4668 |
| BcnI | CCSGG | 3 cut(s) | 80, 81, 3015 |
| BcoDI | GTCTC | 9 cut(s) | 853, 947, 1197, 1356, 1572, 3260, 3389, 3717, 4481 |
| BfaI | CTAG | 7 cut(s) | 308, 876, 2307, 2361, 3377, 4529, 4586 |
| BfmI | CTRYAG | 9 cut(s) | 1005, 1224, 1383, 1410, 1582, 1626, 2034, 2928, 3838 |
| BfuAI | ACCTGC | 1 cut(s) | 2965 |
| BglII | AGATCT | 2 cut(s) | 2030, 4891 |
| BlpI | GCTNAGC | 1 cut(s) | 2394 |
| Bme1390I | CCNGG | 5 cut(s) | 80, 81, 2538, 3015, 3766 |
| Bme18I | GGWCC | 9 cut(s) | 54, 1151, 1526, 1595, 2518, 2611, 3197, 3717, 3871 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3918 |
| BmeT110I | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| BmiI | GGNNCC | 9 cut(s) | 109, 229, 1000, 1597, 2602, 2856, 4032, 4251, 4659 |
| BmrFI | CCNGG | 5 cut(s) | 80, 81, 2538, 3015, 3766 |
| BmrI | ACTGGG | 5 cut(s) | 1974, 2755, 2982, 3075, 3556 |
| BmtI | GCTAGC | 2 cut(s) | 879, 4589 |
| BmuI | ACTGGG | 5 cut(s) | 1974, 2755, 2982, 3075, 3556 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1441 |
| BpiI | GAAGAC | 3 cut(s) | 168, 2244, 3917 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 347, 379 |
| BpmI | CTGGAG | 5 cut(s) | 1212, 1221, 1380, 1596, 3677 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2394 |
| Bpu14I | TTCGAA | 1 cut(s) | 2354 |
| BpuEI | CTTGAG | 3 cut(s) | 2085, 4321, 4639 |
| BpuMI | CCSGG | 3 cut(s) | 80, 81, 3015 |
| BsaAI | YACGTR | 1 cut(s) | 4181 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1977 |
| BsaI | GGTCTC | 3 cut(s) | 1197, 1356, 3717 |
| BsaWI | WCCGGW | 6 cut(s) | 56, 886, 1307, 1528, 3391, 4406 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 828, 858, 3662, 3692 |
| Bse118I | RCCGGY | 2 cut(s) | 2456, 3289 |
| Bse21I | CCTNAGG | 1 cut(s) | 4820 |
| Bse3DI | GCAATG | 6 cut(s) | 2434, 2580, 3039, 3192, 3433, 4272 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1977 |
| BseAI | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| BseBI | CCWGG | 2 cut(s) | 2538, 3766 |
| BseGI | GGATG | 6 cut(s) | 79, 280, 2107, 2316, 2899, 4206 |
| BseJI | GATNNNNATC | 1 cut(s) | 1977 |
| BseMI | GCAATG | 6 cut(s) | 2434, 2580, 3039, 3192, 3433, 4272 |
| BseRI | GAGGAG | 4 cut(s) | 1824, 3153, 3881, 4834 |
| BseYI | CCCAGC | 1 cut(s) | 2468 |
| Bsh1236I | CGCG | 1 cut(s) | 3820 |
| BshFI | GGCC | 5 cut(s) | 1021, 3107, 3293, 3769, 4031 |
| BshNI | GGYRCC | 3 cut(s) | 107, 227, 2854 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3065, 3221 |
| BsiHKCI | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| BslFI | GGGAC | 4 cut(s) | 464, 1201, 4535, 4955 |
| BsmAI | GTCTC | 9 cut(s) | 853, 947, 1197, 1356, 1572, 3260, 3389, 3717, 4481 |
| BsmBI | CGTCTC | 1 cut(s) | 4481 |
| BsmFI | GGGAC | 4 cut(s) | 464, 1201, 4535, 4955 |
| BsmI | GAATGC | 4 cut(s) | 130, 622, 2803, 4564 |
| BsnI | GGCC | 5 cut(s) | 1021, 3107, 3293, 3769, 4031 |
| Bso31I | GGTCTC | 3 cut(s) | 1197, 1356, 3717 |
| BsoBI | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| Bsp119I | TTCGAA | 1 cut(s) | 2354 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1003, 3065, 3221, 4662 |
| Bsp13I | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| Bsp1407I | TGTACA | 1 cut(s) | 631 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2394 |
| Bsp19I | CCATGG | 4 cut(s) | 2521, 4221, 4553, 4648 |
| BspANI | GGCC | 5 cut(s) | 1021, 3107, 3293, 3769, 4031 |
| BspEI | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| BspFNI | CGCG | 1 cut(s) | 3820 |
| BspHI | TCATGA | 1 cut(s) | 1981 |
| BspLI | GGNNCC | 9 cut(s) | 109, 229, 1000, 1597, 2602, 2856, 4032, 4251, 4659 |
| BspMAI | CTGCAG | 4 cut(s) | 1009, 1228, 1387, 2932 |
| BspMI | ACCTGC | 1 cut(s) | 2965 |
| BspOI | GCTAGC | 2 cut(s) | 879, 4589 |
| BspPI | GGATC | 9 cut(s) | 91, 385, 668, 897, 1829, 2212, 2758, 4301, 4775 |
| BspQI | GCTCTTC | 1 cut(s) | 3323 |
| BspT104I | TTCGAA | 1 cut(s) | 2354 |
| BspT107I | GGYRCC | 3 cut(s) | 107, 227, 2854 |
| BspTNI | GGTCTC | 3 cut(s) | 1197, 1356, 3717 |
| BsrDI | GCAATG | 6 cut(s) | 2434, 2580, 3039, 3192, 3433, 4272 |
| BsrFI | RCCGGY | 2 cut(s) | 2456, 3289 |
| BsrGI | TGTACA | 1 cut(s) | 631 |
| BssAI | RCCGGY | 2 cut(s) | 2456, 3289 |
| BssT1I | CCWWGG | 6 cut(s) | 2521, 3045, 3771, 4221, 4553, 4648 |
| Bst2UI | CCWGG | 2 cut(s) | 2538, 3766 |
| BstAUI | TGTACA | 1 cut(s) | 631 |
| BstBAI | YACGTR | 1 cut(s) | 4181 |
| BstBI | TTCGAA | 1 cut(s) | 2354 |
| BstC8I | GCNNGC | 7 cut(s) | 877, 905, 2425, 3291, 3612, 4248, 4587 |
| BstDSI | CCRYGG | 4 cut(s) | 2521, 4221, 4553, 4648 |
| BstF5I | GGATG | 6 cut(s) | 79, 280, 2107, 2316, 2899, 4206 |
| BstFNI | CGCG | 1 cut(s) | 3820 |
| BstMAI | GTCTC | 9 cut(s) | 853, 947, 1197, 1356, 1572, 3260, 3389, 3717, 4481 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 209, 646, 1118, 1493, 1778, 2462, 2800, 4568 |
| BstNI | CCWGG | 2 cut(s) | 2538, 3766 |
| BstNSI | RCATGY | 4 cut(s) | 509, 638, 665, 3761 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1441 |
| BstSCI | CCNGG | 5 cut(s) | 78, 79, 2536, 3013, 3764 |
| BstSFI | CTRYAG | 9 cut(s) | 1005, 1224, 1383, 1410, 1582, 1626, 2034, 2928, 3838 |
| BstUI | CGCG | 1 cut(s) | 3820 |
| BstV2I | GAAGAC | 3 cut(s) | 168, 2244, 3917 |
| BstX2I | RGATCY | 6 cut(s) | 889, 1834, 2030, 2750, 4293, 4891 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 146, 1148, 1523, 2071 |
| BstYI | RGATCY | 6 cut(s) | 889, 1834, 2030, 2750, 4293, 4891 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4820 |
| BsuRI | GGCC | 5 cut(s) | 1021, 3107, 3293, 3769, 4031 |
| BtgI | CCRYGG | 4 cut(s) | 2521, 4221, 4553, 4648 |
| BtsCI | GGATG | 6 cut(s) | 79, 280, 2107, 2316, 2899, 4206 |
| BveI | ACCTGC | 1 cut(s) | 2965 |
| Cac8I | GCNNGC | 7 cut(s) | 877, 905, 2425, 3291, 3612, 4248, 4587 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1013, 1838, 4040, 4827 |
| CciI | TCATGA | 1 cut(s) | 1981 |
| Cfr10I | RCCGGY | 2 cut(s) | 2456, 3289 |
| Cfr9I | CCCGGG | 1 cut(s) | 79 |
| CseI | GACGC | 1 cut(s) | 4463 |
| Csp6I | GTAC | 3 cut(s) | 632, 2933, 3540 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2688, 2723, 2957, 2992 |
| CviQI | GTAC | 3 cut(s) | 632, 2933, 3540 |
| DraI | TTTAAA | 2 cut(s) | 973, 4350 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1195, 2248 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3918 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1195, 2248 |
| EaeI | YGGCCR | 1 cut(s) | 3291 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3918 |
| Ecl136II | GAGCTC | 1 cut(s) | 3219 |
| Eco130I | CCWWGG | 6 cut(s) | 2521, 3045, 3771, 4221, 4553, 4648 |
| Eco147I | AGGCCT | 2 cut(s) | 1021, 3107 |
| Eco24I | GRGCYC | 3 cut(s) | 1003, 3221, 4662 |
| Eco31I | GGTCTC | 3 cut(s) | 1197, 1356, 3717 |
| Eco32I | GATATC | 1 cut(s) | 3299 |
| Eco47I | GGWCC | 9 cut(s) | 54, 1151, 1526, 1595, 2518, 2611, 3197, 3717, 3871 |
| Eco53kI | GAGCTC | 1 cut(s) | 3219 |
| Eco72I | CACGTG | 1 cut(s) | 4181 |
| Eco81I | CCTNAGG | 1 cut(s) | 4820 |
| Eco88I | CYCGRG | 5 cut(s) | 79, 2246, 2830, 2883, 3109 |
| EcoICRI | GAGCTC | 1 cut(s) | 3219 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1595, 3871 |
| EcoRI | GAATTC | 2 cut(s) | 2356, 3830 |
| EcoRII | CCWGG | 2 cut(s) | 2536, 3764 |
| EcoRV | GATATC | 1 cut(s) | 3299 |
| EcoT14I | CCWWGG | 6 cut(s) | 2521, 3045, 3771, 4221, 4553, 4648 |
| EcoT22I | ATGCAT | 5 cut(s) | 205, 462, 864, 2005, 4735 |
| EcoT38I | GRGCYC | 3 cut(s) | 1003, 3221, 4662 |
| ErhI | CCWWGG | 6 cut(s) | 2521, 3045, 3771, 4221, 4553, 4648 |
| Esp3I | CGTCTC | 1 cut(s) | 4481 |
| FaqI | GGGAC | 4 cut(s) | 464, 1201, 4535, 4955 |
| FauI | CCCGC | 3 cut(s) | 1606, 2107, 4622 |
| FauNDI | CATATG | 1 cut(s) | 3402 |
| FbaI | TGATCA | 5 cut(s) | 268, 1648, 1978, 2896, 4668 |
| FokI | GGATG | 6 cut(s) | 86, 287, 2094, 2323, 2906, 4213 |
| FriOI | GRGCYC | 3 cut(s) | 1003, 3221, 4662 |
| FspBI | CTAG | 7 cut(s) | 308, 876, 2307, 2361, 3377, 4529, 4586 |
| GsaI | CCCAGC | 1 cut(s) | 2472 |
| GsuI | CTGGAG | 5 cut(s) | 1212, 1221, 1380, 1596, 3677 |
| HaeIII | GGCC | 5 cut(s) | 1021, 3107, 3293, 3769, 4031 |
| HgaI | GACGC | 1 cut(s) | 4463 |
| HindIII | AAGCTT | 1 cut(s) | 4065 |
| Hpy166II | GTNNAC | 6 cut(s) | 1052, 1102, 1477, 2710, 3418, 4136 |
| Hpy8I | GTNNAC | 6 cut(s) | 1052, 1102, 1477, 2710, 3418, 4136 |
| HpyCH4IV | ACGT | 1 cut(s) | 4180 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 209, 646, 1118, 1493, 1778, 2462, 2800, 4568 |
| HpySE526I | ACGT | 1 cut(s) | 4180 |
| Kpn2I | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| KroI | GCCGGC | 1 cut(s) | 3289 |
| KroNI | GCCGGC | 1 cut(s) | 3291 |
| Ksp22I | TGATCA | 5 cut(s) | 268, 1648, 1978, 2896, 4668 |
| LguI | GCTCTTC | 1 cut(s) | 3323 |
| LmnI | GCTCC | 9 cut(s) | 436, 998, 2314, 2606, 3060, 3166, 3456, 4255, 4657 |
| MaeI | CTAG | 7 cut(s) | 308, 876, 2307, 2361, 3377, 4529, 4586 |
| MaeII | ACGT | 1 cut(s) | 4180 |
| MfeI | CAATTG | 1 cut(s) | 2700 |
| MflI | RGATCY | 6 cut(s) | 889, 1834, 2030, 2750, 4293, 4891 |
| MhlI | GDGCHC | 4 cut(s) | 1003, 3065, 3221, 4662 |
| MmeI | TCCRAC | 3 cut(s) | 48, 2118, 4657 |
| Mph1103I | ATGCAT | 5 cut(s) | 205, 462, 864, 2005, 4735 |
| MroI | TCCGGA | 3 cut(s) | 1528, 3391, 4406 |
| MroNI | GCCGGC | 1 cut(s) | 3289 |
| MroXI | GAANNNNTTC | 3 cut(s) | 812, 2220, 4607 |
| MslI | CAYNNNNRTG | 7 cut(s) | 144, 444, 662, 831, 1908, 3627, 4580 |
| MspA1I | CMGCKG | 2 cut(s) | 1646, 2114 |
| MspR9I | CCNGG | 5 cut(s) | 80, 81, 2538, 3015, 3766 |
| MunI | CAATTG | 1 cut(s) | 2700 |
| Mva1269I | GAATGC | 4 cut(s) | 130, 622, 2803, 4564 |
| MvaI | CCWGG | 2 cut(s) | 2538, 3766 |
| MvnI | CGCG | 1 cut(s) | 3820 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 209, 646, 1118, 1493, 1778, 2462, 2800, 4568 |
| NaeI | GCCGGC | 1 cut(s) | 3291 |
| NciI | CCSGG | 3 cut(s) | 80, 81, 3015 |
| NcoI | CCATGG | 4 cut(s) | 2521, 4221, 4553, 4648 |
| NdeI | CATATG | 1 cut(s) | 3402 |
| NgoMIV | GCCGGC | 1 cut(s) | 3289 |
| NheI | GCTAGC | 2 cut(s) | 875, 4585 |
| NlaIV | GGNNCC | 9 cut(s) | 109, 229, 1000, 1597, 2602, 2856, 4032, 4251, 4659 |
| NmeAIII | GCCGAG | 1 cut(s) | 873 |
| NmuCI | GTSAC | 4 cut(s) | 193, 344, 3009, 3049 |
| NsiI | ATGCAT | 5 cut(s) | 205, 462, 864, 2005, 4735 |
| NspI | RCATGY | 4 cut(s) | 509, 638, 665, 3761 |
| NspV | TTCGAA | 1 cut(s) | 2354 |
| PaeR7I | CTCGAG | 1 cut(s) | 3109 |
| PagI | TCATGA | 1 cut(s) | 1981 |
| PceI | AGGCCT | 2 cut(s) | 1021, 3107 |
| PciI | ACATGT | 3 cut(s) | 505, 634, 661 |
| PciSI | GCTCTTC | 1 cut(s) | 3323 |
| PctI | GAATGC | 4 cut(s) | 130, 622, 2803, 4564 |
| PdiI | GCCGGC | 1 cut(s) | 3291 |
| PdmI | GAANNNNTTC | 3 cut(s) | 812, 2220, 4607 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4654 |
| PmaCI | CACGTG | 1 cut(s) | 4181 |
| PmlI | CACGTG | 1 cut(s) | 4181 |
| Ppu21I | YACGTR | 1 cut(s) | 4181 |
| PpuMI | RGGWCCY | 2 cut(s) | 1595, 3871 |
| PscI | ACATGT | 3 cut(s) | 505, 634, 661 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1441 |
| PshBI | ATTAAT | 1 cut(s) | 3825 |
| Psp124BI | GAGCTC | 1 cut(s) | 3221 |
| Psp5II | RGGWCCY | 2 cut(s) | 1595, 3871 |
| Psp6I | CCWGG | 2 cut(s) | 2536, 3764 |
| PspCI | CACGTG | 1 cut(s) | 4181 |
| PspFI | CCCAGC | 1 cut(s) | 2468 |
| PspGI | CCWGG | 2 cut(s) | 2536, 3764 |
| PspN4I | GGNNCC | 9 cut(s) | 109, 229, 1000, 1597, 2602, 2856, 4032, 4251, 4659 |
| PspPPI | RGGWCCY | 2 cut(s) | 1595, 3871 |
| PspXI | VCTCGAGB | 1 cut(s) | 3109 |
| PstI | CTGCAG | 4 cut(s) | 1009, 1228, 1387, 2932 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1013, 1838, 4040, 4827 |
| PsuI | RGATCY | 6 cut(s) | 889, 1834, 2030, 2750, 4293, 4891 |
| PvuII | CAGCTG | 1 cut(s) | 1646 |
| RsaI | GTAC | 3 cut(s) | 633, 2934, 3541 |
| RsaNI | GTAC | 3 cut(s) | 632, 2933, 3540 |
| RseI | CAYNNNNRTG | 7 cut(s) | 144, 444, 662, 831, 1908, 3627, 4580 |
| SacI | GAGCTC | 1 cut(s) | 3221 |
| SapI | GCTCTTC | 1 cut(s) | 3323 |
| ScrFI | CCNGG | 5 cut(s) | 80, 81, 2538, 3015, 3766 |
| SduI | GDGCHC | 4 cut(s) | 1003, 3065, 3221, 4662 |
| SfcI | CTRYAG | 9 cut(s) | 1005, 1224, 1383, 1410, 1582, 1626, 2034, 2928, 3838 |
| Sfr274I | CTCGAG | 1 cut(s) | 3109 |
| SfuI | TTCGAA | 1 cut(s) | 2354 |
| SinI | GGWCC | 9 cut(s) | 54, 1151, 1526, 1595, 2518, 2611, 3197, 3717, 3871 |
| SlaI | CTCGAG | 1 cut(s) | 3109 |
| SmaI | CCCGGG | 1 cut(s) | 81 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 144, 444, 662, 831, 1908, 3627, 4580 |
| SmlI | CTYRAG | 4 cut(s) | 2100, 3109, 4336, 4618 |
| SmoI | CTYRAG | 4 cut(s) | 2100, 3109, 4336, 4618 |
| SseBI | AGGCCT | 2 cut(s) | 1021, 3107 |
| SspI | AATATT | 1 cut(s) | 2221 |
| SspMI | CTAG | 7 cut(s) | 308, 876, 2307, 2361, 3377, 4529, 4586 |
| SstI | GAGCTC | 1 cut(s) | 3221 |
| StuI | AGGCCT | 2 cut(s) | 1021, 3107 |
| StyD4I | CCNGG | 5 cut(s) | 78, 79, 2536, 3013, 3764 |
| StyI | CCWWGG | 6 cut(s) | 2521, 3045, 3771, 4221, 4553, 4648 |
| TaiI | ACGT | 1 cut(s) | 4183 |
| TaqI | TCGA | 7 cut(s) | 1695, 2354, 3110, 3221, 3968, 4168, 4504 |
| TatI | WGTACW | 3 cut(s) | 631, 2932, 3539 |
| TseFI | GTSAC | 4 cut(s) | 193, 344, 3009, 3049 |
| Tsp45I | GTSAC | 4 cut(s) | 193, 344, 3009, 3049 |
| TspGWI | ACGGA | 3 cut(s) | 123, 3138, 4510 |
| TspMI | CCCGGG | 1 cut(s) | 79 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4654 |
| VpaK11BI | GGWCC | 9 cut(s) | 54, 1151, 1526, 1595, 2518, 2611, 3197, 3717, 3871 |
| VspI | ATTAAT | 1 cut(s) | 3825 |
| XbaI | TCTAGA | 2 cut(s) | 307, 4528 |
| XceI | RCATGY | 4 cut(s) | 509, 638, 665, 3761 |
| XhoI | CTCGAG | 1 cut(s) | 3109 |
| XmaI | CCCGGG | 1 cut(s) | 79 |
| XmnI | GAANNNNTTC | 3 cut(s) | 812, 2220, 4607 |
| XspI | CTAG | 7 cut(s) | 308, 876, 2307, 2361, 3377, 4529, 4586 |
| Zsp2I | ATGCAT | 5 cut(s) | 205, 462, 864, 2005, 4735 |