Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000018.1

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Forward (+)

262389 .. 265462

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000018.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggagggcaaacacctgtttttgaagctggcacagtaccgggtgcgggtcaatcttaacgattctgatcggcaaaaggctgaggaacgtacccacctcttcatcaaaagattccctgagtggcaacggaaagcgataatccttggcatcgtcaggactacgagaagcctccttagacctaggtatatagatgaggagcttattcgaaaatttattgaaaaaatgaaggagtggaagaagctggtggtgaaggatgatgatttcgagatgatgtcgggggatgaggaggaggaggaggaggaggaggagggggaagaagaaccgacagaacaagacaggagggtgtggtcgtacctttccagtagcctgggattcagaatgaagccaggagaagatgtcaagatcgtcaggctgatgattcctttcttagcccaatgttgtggacgtcttccaccagaaggacccgcgagatgtgtccacatcaaaatgttcatacaccagttccaaacatatatcattaaatattgccttagcgacctgaacgacgtggagatgctgctcgatgtcattaaggctgtcgagtcaagtccagcaaatccagaaaataagttaaagaaaaatataccaactaaagaagaagggattgctgcccccatgtacatcttaaaactagagagaagaaaaggacctgcagaagaaaatcttgtggcaaatcctatagctattgttcaatctgctgaaggacaggaatcttatgagaagtccaatgagtctttacaggtgaactttgctgccagtgatgctggtatagatctagctacccactcagttggtctggatgataatgaaaaagatggaaactgtgatgggagtggggagtttggagactacagcagaaaaggacctgcagaagaaaatcttgtggcaactcctatagctactgttcaatcagctgatcatcatgaaaaccaaatttatccagcagctaactcacacaaaggtgatgatgccggtgattatgagaaaggggtaattgaaaagtgtaataaaattggagatgccggtttcaatgaaaaggctgaaaccgctaacttatgtggggatgacaaaagcaaaggcgtaattgaaaagtgtcggttgctgcaacgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

43.52

Weight (kDa)

5.13

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	448
Acc36I	ACCTGC	2 cut(s)	697, 913
AccII	CGCG	1 cut(s)	467
AciI	CCGC	3 cut(s)	46, 465, 1086
AclI	AACGTT	1 cut(s)	1147
AcsI	RAATTY	2 cut(s)	209, 972
AcuI	CTGAAG	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	445
AfaI	GTAC	4 cut(s)	38, 91, 353, 659
AfiI	CCNNNNNNNGG	2 cut(s)	46, 458
AgsI	TTSAA	7 cut(s)	25, 218, 731, 947, 1037, 1069, 1127
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	2 cut(s)	366, 385
AleI	CACNNNNGTG	1 cut(s)	999
AluBI	AGCT	8 cut(s)	28, 199, 241, 722, 818, 938, 953, 986
AluI	AGCT	8 cut(s)	28, 199, 241, 722, 818, 938, 953, 986
Alw26I	GTCTC	1 cut(s)	879
ApeKI	GCWGC	5 cut(s)	556, 647, 791, 983, 1141
ApoI	RAATTY	2 cut(s)	209, 972
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	461, 686, 902
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	259, 793, 1013, 1025
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	3 cut(s)	461, 686, 902
AvrII	CCTAGG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	543, 634, 778, 995, 1128
BccI	CCATC	2 cut(s)	848, 860
BciT130I	CCWGG	2 cut(s)	368, 387
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	879
BfaI	CTAG	3 cut(s)	180, 671, 815
BfmI	CTRYAG	5 cut(s)	690, 717, 889, 906, 933
BfuAI	ACCTGC	2 cut(s)	697, 913
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	5 cut(s)	557, 648, 792, 984, 1142
BlnI	CCTAGG	1 cut(s)	179
BlsI	GCNGC	5 cut(s)	558, 649, 793, 985, 1143
Bme1390I	CCNGG	3 cut(s)	41, 368, 387
Bme18I	GGWCC	3 cut(s)	461, 686, 902
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	461, 686, 902
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	41, 368, 387
BmsI	GCATC	5 cut(s)	156, 543, 790, 997, 1048
BpiI	GAAGAC	1 cut(s)	440
Bpu10I	CCTNAGC	2 cut(s)	81, 530
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	3 cut(s)	142, 179, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 458
Bse118I	RCCGGY	2 cut(s)	1010, 1061
Bse1I	ACTGG	3 cut(s)	360, 499, 795
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	368, 387
BseDI	CCNNGG	3 cut(s)	142, 179, 367
BseGI	GGATG	4 cut(s)	259, 286, 844, 1108
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	46, 458
BseMII	CTCAG	3 cut(s)	72, 108, 840
BseNI	ACTGG	3 cut(s)	360, 499, 795
BseRI	GAGGAG	9 cut(s)	209, 299, 302, 305, 308, 311, 314, 317, 320
BseXI	GCAGC	5 cut(s)	543, 634, 778, 995, 1128
Bsh1236I	CGCG	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	40, 1011, 1062
BslI	CCNNNNNNNGG	2 cut(s)	46, 458
BsmAI	GTCTC	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	4 cut(s)	67, 402, 811, 955
BspACI	CCGC	3 cut(s)	46, 465, 1086
BspCNI	CTCAG	3 cut(s)	73, 109, 839
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	1 cut(s)	463
BspMAI	CTGCAG	2 cut(s)	694, 910
BspMI	ACCTGC	2 cut(s)	697, 913
BspT104I	TTCGAA	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	1010, 1061
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	360, 499, 795
BssAI	RCCGGY	2 cut(s)	1010, 1061
BssECI	CCNNGG	3 cut(s)	142, 179, 367
BssMI	GATC	4 cut(s)	67, 402, 811, 955
BssNI	GRCGYC	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	142, 179
Bst2UI	CCWGG	2 cut(s)	368, 387
Bst4CI	ACNGT	3 cut(s)	36, 863, 943
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	445
BstAUI	TGTACA	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	7 cut(s)	81, 117, 173, 427, 530, 826, 1152
BstF5I	GGATG	4 cut(s)	259, 286, 844, 1108
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	4 cut(s)	70, 405, 814, 958
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	4 cut(s)	67, 402, 811, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 1085
BstNI	CCWGG	2 cut(s)	368, 387
BstSCI	CCNGG	3 cut(s)	39, 366, 385
BstSFI	CTRYAG	5 cut(s)	690, 717, 889, 906, 933
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	5 cut(s)	543, 634, 778, 995, 1128
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	3 cut(s)	367, 440, 830
BstYI	RGATCY	1 cut(s)	811
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	4 cut(s)	259, 286, 844, 1108
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	2 cut(s)	697, 913
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	961
Cfr10I	RCCGGY	2 cut(s)	1010, 1061
Cfr13I	GGNCC	3 cut(s)	461, 686, 902
Csp6I	GTAC	4 cut(s)	37, 90, 352, 658
CviAII	CATG	2 cut(s)	655, 962
CviQI	GTAC	4 cut(s)	37, 90, 352, 658
DdeI	CTNAG	7 cut(s)	81, 117, 173, 427, 530, 826, 1152
DpnI	GATC	4 cut(s)	69, 404, 813, 957
DpnII	GATC	4 cut(s)	67, 402, 811, 955
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	142, 179
Eco47I	GGWCC	3 cut(s)	461, 686, 902
Eco57I	CTGAAG	1 cut(s)	759
EcoO109I	RGGNCCY	3 cut(s)	461, 686, 902
EcoRII	CCWGG	2 cut(s)	366, 385
EcoT14I	CCWWGG	2 cut(s)	142, 179
ErhI	CCWWGG	2 cut(s)	142, 179
FaeI	CATG	2 cut(s)	658, 965
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 903, 935
FatI	CATG	2 cut(s)	654, 961
FauI	CCCGC	2 cut(s)	39, 472
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	5 cut(s)	557, 648, 792, 984, 1142
FokI	GGATG	4 cut(s)	266, 293, 851, 1115
Fsp4HI	GCNGC	5 cut(s)	557, 648, 792, 984, 1142
FspBI	CTAG	3 cut(s)	180, 671, 815
GluI	GCNGC	5 cut(s)	557, 648, 792, 984, 1142
HapII	CCGG	3 cut(s)	40, 1011, 1062
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	658, 965
HinfI	GANTC	7 cut(s)	62, 111, 372, 418, 581, 749, 770
HpaII	CCGG	3 cut(s)	40, 1011, 1062
HphI	GGTGA	4 cut(s)	259, 793, 1013, 1025
Hpy166II	GTNNAC	3 cut(s)	443, 478, 784
Hpy188I	TCNGA	2 cut(s)	67, 377
Hpy188III	TCNNGA	6 cut(s)	154, 265, 400, 599, 836, 962
Hpy8I	GTNNAC	3 cut(s)	443, 478, 784
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	5 cut(s)	220, 244, 452, 632, 734
HpyCH4III	ACNGT	3 cut(s)	36, 863, 943
HpyCH4IV	ACGT	4 cut(s)	88, 445, 546, 1147
HpyCH4V	TGCA	3 cut(s)	692, 908, 1144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 1085
HpyF3I	CTNAG	7 cut(s)	81, 117, 173, 427, 530, 826, 1152
HpySE526I	ACGT	4 cut(s)	88, 445, 546, 1147
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	2 cut(s)	658, 965
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	67, 402, 811, 955
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	5 cut(s)	543, 634, 778, 995, 1128
LweI	GCATC	5 cut(s)	156, 543, 790, 997, 1048
MaeI	CTAG	3 cut(s)	180, 671, 815
MaeII	ACGT	4 cut(s)	88, 445, 546, 1147
MalI	GATC	4 cut(s)	69, 404, 813, 957
MboI	GATC	4 cut(s)	67, 402, 811, 955
MflI	RGATCY	1 cut(s)	811
MluCI	AATT	5 cut(s)	209, 972, 1032, 1050, 1122
MlyI	GAGTC	2 cut(s)	590, 779
MseI	TTAA	5 cut(s)	57, 519, 570, 611, 665
MslI	CAYNNNNRTG	2 cut(s)	485, 999
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	3 cut(s)	40, 1011, 1062
MspR9I	CCNGG	3 cut(s)	41, 368, 387
MvaI	CCWGG	2 cut(s)	368, 387
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	800, 1085
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	4 cut(s)	67, 402, 811, 955
NlaIII	CATG	2 cut(s)	658, 965
NlaIV	GGNNCC	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	999
PagI	TCATGA	1 cut(s)	961
PfeI	GAWTC	5 cut(s)	62, 111, 372, 418, 749
PkrI	GCNGC	5 cut(s)	558, 649, 793, 985, 1143
PleI	GAGTC	2 cut(s)	589, 778
PpsI	GAGTC	2 cut(s)	589, 778
PpuMI	RGGWCCY	3 cut(s)	461, 686, 902
Psp1406I	AACGTT	1 cut(s)	1147
Psp5II	RGGWCCY	3 cut(s)	461, 686, 902
Psp6I	CCWGG	2 cut(s)	366, 385
PspGI	CCWGG	2 cut(s)	366, 385
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	461, 686, 902
PspPPI	RGGWCCY	3 cut(s)	461, 686, 902
PstI	CTGCAG	2 cut(s)	694, 910
PsuI	RGATCY	1 cut(s)	811
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	4 cut(s)	38, 91, 353, 659
RsaNI	GTAC	4 cut(s)	37, 90, 352, 658
RseI	CAYNNNNRTG	2 cut(s)	485, 999
SaqAI	TTAA	5 cut(s)	57, 519, 570, 611, 665
SatI	GCNGC	5 cut(s)	557, 648, 792, 984, 1142
Sau3AI	GATC	4 cut(s)	67, 402, 811, 955
Sau96I	GGNCC	3 cut(s)	461, 686, 902
SchI	GAGTC	2 cut(s)	590, 779
ScrFI	CCNGG	3 cut(s)	41, 368, 387
SfaNI	GCATC	5 cut(s)	156, 543, 790, 997, 1048
SfcI	CTRYAG	5 cut(s)	690, 717, 889, 906, 933
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	3 cut(s)	461, 686, 902
SmiMI	CAYNNNNRTG	2 cut(s)	485, 999
Sse9I	AATT	5 cut(s)	209, 972, 1032, 1050, 1122
SsiI	CCGC	3 cut(s)	46, 465, 1086
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	3 cut(s)	180, 671, 815
StyD4I	CCNGG	3 cut(s)	39, 366, 385
StyI	CCWWGG	2 cut(s)	142, 179
TaaI	ACNGT	3 cut(s)	36, 863, 943
TaiI	ACGT	4 cut(s)	91, 448, 549, 1150
TaqI	TCGA	4 cut(s)	205, 264, 561, 579
TasI	AATT	5 cut(s)	209, 972, 1032, 1050, 1122
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	5 cut(s)	62, 111, 372, 418, 749
Tru1I	TTAA	5 cut(s)	57, 519, 570, 611, 665
Tru9I	TTAA	5 cut(s)	57, 519, 570, 611, 665
TscAI	CASTG	1 cut(s)	802
TseI	GCWGC	5 cut(s)	556, 647, 791, 983, 1141
TspDTI	ATGAA	7 cut(s)	91, 239, 395, 481, 861, 978, 1086
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	802
VpaK11BI	GGWCC	3 cut(s)	461, 686, 902
XapI	RAATTY	2 cut(s)	209, 972
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	3 cut(s)	180, 671, 815
ZraI	GACGTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.