Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Forward (+)

50006523 .. 50025277

Gene Structure 18755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGGGCAAACACCTGTTTTTGAAGCTAGCGAGTACGGGGTGCGGGTCAATCTTAACTATTCGATCGGCAAAAGGTGAGGAAATTACCCACCTCTTCATCAAAATATTTCCTGATGAGTCGGTACAGAAATCGATAATCTTTGCCCTCACCAGGGTTACGAGAAACCGCCTTAGACCTAAGGTGATAGACGAGGAGCTTATTCGAAAATATATTGAAAACACAAAGAAGCCGGCGGTGAAGGAGGATGAATTTGAGGGGGATGAGGAGGAGGAGGAGGAGGAGACGCTATTGGAGGAGGGGGAAGAAGAACCGACAGAAGAAGACAGGAAGGTGTGGTCGTACCTTTCTAGTAGACTGGGATTCAGAATGAATCCAGGAGAAGATGTCAAGATCGTCAGGCTGATGATTCCTTTCTTAGCCCAATGTTCTGGACCTCTTCCACCAGAAGGATCCGCGAGATGTGTCTACATCAAAATGTTCATGCACCAGTTCCAAACATATATCTATAAATATTGCCTTAGCGACCTGAACGACGTGGAGATGCTGCTCAATGTCATTGAGGCTGTCGAGTCAAGTCCAGCAAATCCAGAAAATAAGGTGCGGCTGAGTAGATCTTTAATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

24.09

Weight (kDa)

5.01

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	355, 468
AccII	CGCG	1 cut(s)	458
AciI	CCGC	5 cut(s)	45, 169, 236, 456, 604
AclWI	GGATC	2 cut(s)	447, 460
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	3 cut(s)	37, 126, 344
AfiI	CCNNNNNNNGG	3 cut(s)	153, 154, 449
AgsI	TTSAA	2 cut(s)	25, 218
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	152, 376
AluBI	AGCT	2 cut(s)	28, 199
AluI	AGCT	2 cut(s)	28, 199
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	447, 460
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	4 cut(s)	89, 142, 196, 250
AsuII	TTCGAA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	534
BciT130I	CCWGG	2 cut(s)	154, 378
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	29, 351
BglII	AGATCT	1 cut(s)	614
BisI	GCNGC	2 cut(s)	548, 605
BlsI	GCNGC	2 cut(s)	549, 606
Bme1390I	CCNGG	2 cut(s)	154, 378
Bme18I	GGWCC	1 cut(s)	434
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	154, 378
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	534
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 154, 449
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	363, 490
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	154, 378
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	253, 268
BseLI	CCNNNNNNNGG	3 cut(s)	153, 154, 449
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	2 cut(s)	363, 490
BseRI	GAGGAG	8 cut(s)	209, 281, 284, 287, 290, 293, 296, 311
BseXI	GCAGC	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	153, 154, 449
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	65, 393, 452, 614
BspACI	CCGC	5 cut(s)	45, 169, 236, 456, 604
BspCNI	CTCAG	1 cut(s)	600
BspDI	ATCGAT	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	454
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	447, 460
BspT104I	TTCGAA	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	363, 490
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	65, 393, 452, 614
Bst2UI	CCWGG	2 cut(s)	154, 378
Bst6I	CTCTTC	2 cut(s)	101, 444
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	30, 234
BstDEI	CTNAG	5 cut(s)	173, 180, 418, 521, 608
BstF5I	GGATG	2 cut(s)	253, 268
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	4 cut(s)	68, 396, 455, 617
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	4 cut(s)	65, 393, 452, 614
BstMCI	CGRYCG	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	154, 378
BstSCI	CCNGG	2 cut(s)	152, 376
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	2 cut(s)	452, 614
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	2 cut(s)	452, 614
Bsu15I	ATCGAT	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	253, 268
Cac8I	GCNNGC	2 cut(s)	30, 234
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	134
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	36, 125, 343
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	7 cut(s)	28, 199, 232, 403, 422, 566, 607
CviKI_1	RGCY	7 cut(s)	28, 199, 232, 403, 422, 566, 607
CviQI	GTAC	3 cut(s)	36, 125, 343
DdeI	CTNAG	5 cut(s)	173, 180, 418, 521, 608
DpnI	GATC	4 cut(s)	67, 395, 454, 616
DpnII	GATC	4 cut(s)	65, 393, 452, 614
Eam1104I	CTCTTC	2 cut(s)	101, 444
EarI	CTCTTC	2 cut(s)	101, 444
Eco47I	GGWCC	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	152, 376
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	487
FaiI	YATR	5 cut(s)	213, 485, 502, 504, 510
FatI	CATG	1 cut(s)	483
FauI	CCCGC	1 cut(s)	38
FblI	GTMKAC	2 cut(s)	355, 468
Fnu4HI	GCNGC	2 cut(s)	548, 605
FokI	GGATG	2 cut(s)	260, 275
Fsp4HI	GCNGC	2 cut(s)	548, 605
FspBI	CTAG	2 cut(s)	29, 351
GluI	GCNGC	2 cut(s)	548, 605
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	487
HinfI	GANTC	5 cut(s)	119, 363, 373, 409, 572
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	4 cut(s)	89, 142, 196, 250
Hpy166II	GTNNAC	2 cut(s)	356, 469
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	4 cut(s)	113, 391, 432, 590
Hpy8I	GTNNAC	2 cut(s)	356, 469
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	235, 325, 443
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	1 cut(s)	487
HpyF3I	CTNAG	5 cut(s)	173, 180, 418, 521, 608
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	65, 393, 452, 614
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	29, 351
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	67, 395, 454, 616
MboI	GATC	4 cut(s)	65, 393, 452, 614
MboII	GAAGA	7 cut(s)	88, 317, 320, 332, 335, 395, 431
MflI	RGATCY	2 cut(s)	452, 614
MluCI	AATT	2 cut(s)	84, 251
MlyI	GAGTC	2 cut(s)	128, 581
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	2 cut(s)	56, 620
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	154, 378
MvaI	CCWGG	2 cut(s)	154, 378
MvnI	CGCG	1 cut(s)	458
NaeI	GCCGGC	1 cut(s)	234
NdeII	GATC	4 cut(s)	65, 393, 452, 614
NgoMIV	GCCGGC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	363, 373, 409
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	549, 606
Ple19I	CGATCG	1 cut(s)	68
PleI	GAGTC	2 cut(s)	127, 580
PpsI	GAGTC	2 cut(s)	127, 580
Psp6I	CCWGG	2 cut(s)	152, 376
PspGI	CCWGG	2 cut(s)	152, 376
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	452, 614
PvuI	CGATCG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	37, 126, 344
RsaNI	GTAC	3 cut(s)	36, 125, 343
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	56, 620
SatI	GCNGC	2 cut(s)	548, 605
Sau3AI	GATC	4 cut(s)	65, 393, 452, 614
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	2 cut(s)	128, 581
ScrFI	CCNGG	2 cut(s)	154, 378
SfaNI	GCATC	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	84, 251
SsiI	CCGC	5 cut(s)	45, 169, 236, 456, 604
SspI	AATATT	2 cut(s)	108, 515
SspMI	CTAG	2 cut(s)	29, 351
StyD4I	CCNGG	2 cut(s)	152, 376
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	4 cut(s)	64, 134, 205, 570
TasI	AATT	2 cut(s)	84, 251
TauI	GCSGC	1 cut(s)	607
TfiI	GAWTC	3 cut(s)	363, 373, 409
Tru1I	TTAA	2 cut(s)	56, 620
Tru9I	TTAA	2 cut(s)	56, 620
TseI	GCWGC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	88, 264, 386, 472
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	2 cut(s)	355, 468
XspI	CTAG	2 cut(s)	29, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.