Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006593.1

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Reverse (-)

37181 .. 37621

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006593.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagaaagctgaaaagtatgcatcatctagagacattagtaaaagctctacagaaaaaacctttgcggaggactctactaaagaagaacgaagagaccattgctaaggtgacaaacgggagcactgggaagcaacacactcctttgaaaagccttttgggggaggcctcaagtgaaagcaaaggaaagccactgaaccaaaaagaaaatcttgctcctgctcctgagaaagatgataaagctgcaaaggtcagtggtcctgtaacgacaacagtgagctcgattctgaatcctgaatcgccgactggtcaggctgctaagaaagagagtgcaaaagaatggaacttgccggctagatatccttcagacaccaagagtgagaagaggaaagtaaagggaagattctgggctcaatttgtgtgctgcgcatttgtaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.11

Weight (kDa)

10.01

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	427
AciI	CCGC	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	4 cut(s)	10, 47, 242, 279
AluI	AGCT	4 cut(s)	10, 47, 242, 279
Alw21I	GWGCWC	2 cut(s)	125, 281
Alw26I	GTCTC	2 cut(s)	26, 89
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	242, 314, 423
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	281, 412
Bbv12I	GWGCWC	2 cut(s)	125, 281
BbvI	GCAGC	3 cut(s)	229, 301, 410
BcoDI	GTCTC	2 cut(s)	26, 89
BfaI	CTAG	2 cut(s)	29, 354
BfmI	CTRYAG	1 cut(s)	50
BisI	GCNGC	3 cut(s)	243, 315, 424
BlsI	GCNGC	3 cut(s)	244, 316, 425
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	130, 310
Bse3DI	GCAATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	130, 310
BseXI	GCAGC	3 cut(s)	229, 301, 410
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	125, 281
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	26, 89
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	3 cut(s)	125, 281, 412
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	130, 310
BssAI	RCCGGY	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	87, 377
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	105, 225, 318
BstHHI	GCGC	1 cut(s)	428
BstMAI	GTCTC	2 cut(s)	26, 89
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	229, 301, 410
BsuRI	GGCC	1 cut(s)	167
BtsIMutI	CAGTG	4 cut(s)	123, 191, 259, 279
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	105, 225, 318
Eam1104I	CTCTTC	2 cut(s)	87, 377
EarI	CTCTTC	2 cut(s)	87, 377
Ecl136II	GAGCTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	281, 412
Eco31I	GGTCTC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	281, 412
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
Fnu4HI	GCNGC	3 cut(s)	243, 315, 424
FriOI	GRGCYC	2 cut(s)	281, 412
Fsp4HI	GCNGC	3 cut(s)	243, 315, 424
FspBI	CTAG	2 cut(s)	29, 354
FspI	TGCGCA	1 cut(s)	427
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	243, 315, 424
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	5 cut(s)	73, 283, 289, 296, 402
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	288, 367
Hpy188III	TCNNGA	3 cut(s)	29, 224, 293
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	22, 245, 332
HpyF3I	CTNAG	3 cut(s)	105, 225, 318
HspAI	GCGC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	120, 220, 226
LpnPI	CCDG	9 cut(s)	111, 231, 237, 273, 291, 296, 306, 363, 391
Lsp1109I	GCAGC	3 cut(s)	229, 301, 410
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	29, 354
MaeIII	GTNAC	2 cut(s)	109, 262
MboII	GAAGA	4 cut(s)	97, 104, 394, 411
MhlI	GDGCHC	3 cut(s)	125, 281, 412
MluCI	AATT	2 cut(s)	413, 436
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	63, 157, 178, 378
Mph1103I	ATGCAT	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	349
MspI	CCGG	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	351
NgoMIV	GCCGGC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	4 cut(s)	283, 289, 296, 402
PkrI	GCNGC	3 cut(s)	244, 316, 425
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	281
SatI	GCNGC	3 cut(s)	243, 315, 424
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	125, 281, 412
SetI	ASST	7 cut(s)	12, 49, 64, 111, 244, 252, 281
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	413, 436
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	29, 354
SstI	GAGCTC	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	413, 436
TfiI	GAWTC	4 cut(s)	283, 289, 296, 402
TscAI	CASTG	4 cut(s)	130, 198, 259, 279
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	242, 314, 423
Tsp45I	GTSAC	1 cut(s)	109
TspRI	CASTG	4 cut(s)	130, 198, 259, 279
VpaK11BI	GGWCC	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	28
XspI	CTAG	2 cut(s)	29, 354
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.