Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001352

Physical Location & Seq

Genomic Coordinates Forward (+)

11550735 .. 11552400

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTACGAGGTCCTAAAATATATCGTTGAATATTGCCTTAGCGACCTGAACGACGTGGGGACGTTGCTCCACGCCATTGAGACTGTCAAGTCAAGTCCAGCAAATAATCCGGAAAAGGTGCGGCTGGCAAATGATCTGGAAAAGTTGCAGCGCAGGGGTCAATCCGGTATGCCTCAGCCTCCACCAGGGCCACCACCACATGGGCAAACACCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

72

Amino Acids

7.96

Weight (kDa)

6.03

Isoelectric Point (pI)

67.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14200
fragaria_vesca	FvH4_4g08482 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870 FvH4_4g12870
malus_domestica	MD04G1021500.v1.1
prunus_persica	Prupe.1G170500_v2.0.a1 Prupe.1G170500_v2.0.a1
pyrus_communis	pycom03g00900 pycom04g01730
rosa_chinensis	RchiOBHm_Chr2g0127241 RchiOBHm_Chr4g0412531
rosa_laevigata	RLG00000008281
rosa_multiflora	Rmu_co8370959.1_g000001 Rmu_sc0000276.1_g000008 Rmu_sc0000516.1_g000083 Rmu_sc0002136.1_g000011 Rmu_sc0006593.1_g000006 Rmu_sc0006593.1_g000007 Rmu_sc0008096.1_g000007 Rmu_sc0008263.1_g000001 Rmu_ssc0000018.1_g000055
rosa_roxburghii	Rroxscaffold_2G00118500 Rroxscaffold_2G00118800 Rroxscaffold_2G00118810 Rroxscaffold_5G00356750
rosa_rugosa	Rorug02G0252300 Rorug02G0252400 Rorug02G0253700 Rorug02G0253800 Rorug04G0103000
rosa_samantha	Rh1BG048300 Rh1CG058600 Rh1DG062500 Rh2AG281000 Rh2AG281100 Rh2AG281200 Rh2AG342600 Rh2AG342700 Rh2BG337000 Rh2CG329700 Rh2CG329800 Rh2DG338600 Rh2DG353900 Rh2DG368900 Rh4AG173800 Rh4BG173300 Rh4CG184800 Rh4DG169300 Rh5DG312600
rosa_wichuraiana	Rw2G026540 Rw4G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	185, 200
AgsI	TTSAA	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	10, 188
AvaII	GGWCC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	122, 149
BlsI	GCNGC	2 cut(s)	123, 150
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	10, 188
BmrFI	CCNGG	1 cut(s)	186
Bpu10I	CCTNAGC	2 cut(s)	38, 174
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	2 cut(s)	109, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 200
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	185, 200
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	110, 165
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	185, 200
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	38, 174
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	10, 188
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	3 cut(s)	124, 178, 190
CviKI_1	RGCY	3 cut(s)	124, 178, 190
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	38, 174
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	203
FaiI	YATR	3 cut(s)	21, 170, 201
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	122, 149
Fsp4HI	GCNGC	2 cut(s)	122, 149
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	122, 149
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	110, 165
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	110, 165
Hpy188III	TCNNGA	2 cut(s)	110, 137
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	54, 62
HpyCH4V	TGCA	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	38, 174
HpySE526I	ACGT	2 cut(s)	54, 62
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	59, 110, 111, 122, 123, 139, 171, 178, 198
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	2 cut(s)	54, 62
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MnlI	CCTC	2 cut(s)	183, 189
MroI	TCCGGA	1 cut(s)	109
MspI	CCGG	2 cut(s)	110, 165
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	123, 150
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	10, 188
PspPPI	RGGWCCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	122, 149
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	10, 188
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	6 cut(s)	12, 48, 57, 65, 120, 214
SinI	GGWCC	1 cut(s)	10
SsiI	CCGC	1 cut(s)	121
SspI	AATATT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	57, 65
TauI	GCSGC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	10
XagI	CCTNNNNNAGG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.