RchiOBHm_Chr1g0316921

Ankyrin repeat domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
4464727 .. 4472737
8011 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGCTGCATAGGCAAAAACCTGATATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTATGCACGCTTTATCAAAACATGAAGCTGATATTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGGTTGGAAGTTTATGTATGTTTATATATTGA
Functional Annotation

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

6.38

Isoelectric Point (pI)

23.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 78 1.7e-06 Ankyrin repeats (3 copies)
Ank_4 PF13637 20 - 69 3.8e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 4, 131
AseI ATTAAT 1 cut(s) 126
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 5, 132
BlsI GCNGC 2 cut(s) 6, 133
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 188
BsnI GGCC 1 cut(s) 188
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 29, 119, 188, 218
CviKI_1 RGCY 4 cut(s) 29, 119, 188, 218
DdeI CTNAG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 116
FaiI YATR 8 cut(s) 9, 26, 95, 114, 256, 260, 266, 268
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 5, 132
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 5, 132
FspBI CTAG 1 cut(s) 42
GluI GCNGC 2 cut(s) 5, 132
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 1 cut(s) 116
HinfI GANTC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 3 cut(s) 78, 158, 233
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 7, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 4 cut(s) 33, 63, 170, 197
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 42
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 1 cut(s) 49
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 116
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 6, 133
PshBI ATTAAT 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 5, 132
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 22, 41, 121
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 154
TasI AATT 1 cut(s) 168
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 4, 131
TspDTI ATGAA 1 cut(s) 129
VspI ATTAAT 1 cut(s) 126
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.